Factsheet for VIT_02s0025g04000.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007879	Potato	plastid	74.7	72.16
Solyc08g080400.1.1	Tomato	plastid	74.39	71.87
KRH57249	Soybean	plastid	66.77	65.96
KRH03976	Soybean	mitochondrion, nucleus	66.62	65.32
GSMUA_Achr1P16230_001	Banana	cytosol	35.37	65.17
AT1G63100.2	Thale cress	plastid	59.6	59.42
Bra027620.1-P	Field mustard	plastid	55.95	58.07
CDY49199	Canola	plastid	55.95	58.07
CDY47352	Canola	plastid	56.1	57.77
CDY70213	Canola	plastid	55.34	56.45
CDY45974	Canola	plastid	55.34	56.28
Bra026999.1-P	Field mustard	nucleus, plastid	51.52	56.05
GSMUA_Achr7P05850_001	Banana	mitochondrion	54.27	54.77
GSMUA_Achr1P18840_001	Banana	cytosol	49.7	53.09
HORVU7Hr1G010620.1	Barley	cytosol	40.24	46.89
Os06t0127800-01	Rice	plastid	43.75	46.52
TraesCS7D01G053600.1	Wheat	plastid	43.45	45.45
TraesCS7A01G059000.1	Wheat	plastid	43.14	45.14
TraesCS4A01G430600.1	Wheat	plastid	42.68	45.09
Zm00001d045507_P001	Maize	plastid	42.07	44.81
EER87757	Sorghum	mitochondrion	42.07	43.33
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	51.07	38.86
VIT_18s0076g00200.t01	Wine grape	cytosol	16.77	33.74
VIT_19s0015g01930.t01	Wine grape	cytosol	21.19	33.66
VIT_07s0005g03700.t01	Wine grape	cytosol	24.09	32.44
VIT_03s0017g01660.t01	Wine grape	plastid	21.49	31.9
VIT_13s0019g01220.t01	Wine grape	cytosol	22.56	30.96
VIT_11s0016g04630.t01	Wine grape	plastid	24.24	29.89
VIT_06s0009g02390.t01	Wine grape	cytosol	21.49	29.75
VIT_17s0000g10300.t01	Wine grape	nucleus	22.87	28.9
VIT_14s0006g00640.t01	Wine grape	cytosol	24.09	27.77
VIT_19s0085g00540.t01	Wine grape	cytosol	21.8	26.98
VIT_14s0068g01610.t01	Wine grape	plastid	27.29	26.8
VIT_01s0011g05260.t01	Wine grape	cytosol	23.78	26.44
VIT_04s0023g01660.t01	Wine grape	cytosol	20.58	22.02
VIT_08s0056g00050.t01	Wine grape	nucleus	24.7	20.72

Protein Annotations

EntrezGene:100247949	wikigene:100247949	MapMan:15.5.12	ProteinID:CCB58370	ProteinID:CCB58370.1	UniProt:F6HUE7
EMBL:FN596251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009987	GO:GO:0043565	GO:GO:1900459	InterPro:IPR005202	EntrezGene:LOC100247949
wikigene:LOC100247949	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	InterPro:Scarecrow-like_28
InterPro:TF_GRAS	UniParc:UPI0002108308	ArrayExpress:VIT_02s0025g04000	EnsemblPlantsGene:VIT_02s0025g04000	EnsemblPlants:VIT_02s0025g04000.t01	RefSeq:XP_002276880
RefSeq:XP_002276880.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:3511169..3513622

Molecular Weight (calculated)

73262.8 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.377

Length

656 amino acids

Sequence
(BLAST)

001: MLAGCSTLLS PRHRLRSETS AQFQACHFQL PSMSTQRLDL PCSFPRKDAS RSQPIRPVGL SVEKSMEAKT STCSLKQNIR LPPSATSAQT TFIEGRREIK
101: DEFWEKGKSL KRFAEQGSVD ESCMSRAKRK RRSQLGSGNF WFQPSFGVPR SVPGVGNNPQ VSFPLTCSGE EERVCFVPSE VISPPLPLSN NPWLESVVTE
201: ITSLGDNDLE TSHGVVKEAS GSSNSSESHP LALRLHESTV EQEIGNGSSL PHLHEGPKMS GDDENNQGEH QGFELISLLM ACVEAIGSRN IAAISHFIAK
301: LGDLASPKGS PISRVTAYFT EALALRVSRL WPAIFHVTTP RELDRADDDT WTALRLLNQV SPIPKFIHFT SNEILLRAFE GKDRVHIIDF DIKQGLQWPS
401: LFQSLASRTN PPSHVRITGV GESKQELNET GDRLAGFAEA LNLPFEFHPV VDRLEDVRLW MLHVKDKESV AVNCIFQLHK TLYDGSGGAL RDFLGLIRST
501: NPSIVLMAEQ EAEHNELSLE TRVSNSLRYY SAIFDSIDYS LPLDSPVRMK VEEMFAREIR NIIACEGSDR VERHESFEKW RRRMEQGGFR CVGISEREML
601: QSQMLLKMYS CENYSVSKRG QDAALTLSWL DQPLYTVSAW TQVDVAGSSS SFSLPS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.