CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026999.1-P	Field mustard	nucleus, plastid	90.85	97.18
CDY70213	Canola	plastid	96.12	96.42
CDY49199	Canola	plastid	80.16	81.8
CDY47352	Canola	plastid	80.62	81.63
AT1G63100.2	Thale cress	plastid	81.24	79.64
GSMUA_Achr1P16230_001	Banana	cytosol	31.16	56.46
VIT_02s0025g04000.t01	Wine grape	plastid	56.28	55.34
KRH03976	Soybean	mitochondrion, nucleus	54.11	52.17
Solyc08g080400.1.1	Tomato	plastid	54.57	51.84
PGSC0003DMT400007879	Potato	plastid	54.57	51.84
KRH57249	Soybean	plastid	53.33	51.81
GSMUA_Achr7P05850_001	Banana	mitochondrion	45.27	44.92
GSMUA_Achr1P18840_001	Banana	cytosol	41.71	43.81
Os06t0127800-01	Rice	plastid	39.07	40.84
HORVU7Hr1G010620.1	Barley	cytosol	35.5	40.67
TraesCS4A01G430600.1	Wheat	plastid	38.76	40.26
Zm00001d045507_P001	Maize	plastid	38.14	39.94
TraesCS7D01G053600.1	Wheat	plastid	38.6	39.71
TraesCS7A01G059000.1	Wheat	plastid	38.29	39.39
EER87757	Sorghum	mitochondrion	37.67	38.15
CDY64484	Canola	mitochondrion	13.64	35.77
CDY45059	Canola	cytosol	15.97	33.88
CDY68881	Canola	cytosol	12.71	33.61
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	42.64	31.9
CDY50028	Canola	nucleus, plastid	20.31	31.41
CDY43123	Canola	cytosol, extracellular, plastid	2.95	31.15
CDY50706	Canola	cytosol, extracellular, plastid	2.95	31.15
CDY54362	Canola	plastid	20.16	30.88
CDY22795	Canola	cytosol, plastid	21.24	30.86
CDY27670	Canola	cytosol	19.07	30.45
CDY03601	Canola	cytosol	21.09	30.29
CDY70426	Canola	cytosol	21.71	27.61
CDY55037	Canola	cytosol	21.55	27.42
CDY38434	Canola	cytosol	21.4	27.06
CDY36236	Canola	cytosol, nucleus, plastid	23.26	26.98
CDY17662	Canola	cytosol, nucleus, plastid	23.41	26.4
CDY16915	Canola	cytosol, nucleus, plastid	21.09	25.9
CDY04092	Canola	cytosol	21.24	25.66
CDY64837	Canola	cytosol	21.24	25.28
CDY53846	Canola	cytosol	22.33	24.7
CDY72338	Canola	cytosol	22.17	24.44
CDX78219	Canola	nucleus, plastid	21.24	22.72
CDX73496	Canola	nucleus, plastid	21.55	22.35
CDY43122	Canola	nucleus	12.71	19.66
CDY50707	Canola	cytosol, nucleus, plastid	12.56	19.47
CDY37137	Canola	plastid	21.09	14.26

Protein Annotations

EnsemblPlants:CDY45974	EnsemblPlantsGene:GSBRNA2T00082989001	GO:A0A078I998	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_28
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	PFAM:PF03514	PFscan:PS50985	ProteinID:CDY45974
ProteinID:CDY45974.1	SEG:seg	UniParc:UPI0004EE9F51	UniProt:A0A078I998	MapMan:15.5.12	:

Description

BnaA09g12920DBnaA09g12920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I998]

Coordinates

chrLK032644:-:179354..181413

Molecular Weight (calculated)

71943.6 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.534

Length

645 amino acids

Sequence
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAAAAAATS SAVSVHFPMN TQRLDLPCSS SNFPRKETPT NRPLGRSISL DNTNSNNSNN KTGGCSLKQS IKLPPLATTR
101: GNADGFSWND NNNNRGTKSL KRLAEDKEDE SCLSRVKRQR GETGDEHNMG FWFDHFSPAS LPFSLTCSGD NDDEKLISTQ PLPGHPHWVN SVITELAGLG
201: DKDIESSRPA SGSSTSASAE SHSFRHRVPV PTNGSRHPYS QHGGGSTERR TIENINNNNN HRNDTQRDLE LVNLLTGCLE AIRTRNIAAI NHFIARTGEL
301: ASPRGTTPMT RLIAYYTEAL ALRVARMWPH IFHITPPRDF EDESANALRF LNQVTPIPKF IHYTANSMLL RAFQGKERVH IIDFDIKQGL QWPSFFQSLA
401: SSPNPPRHVR ITGVGESKHE LNETGDRLHG FAEAMHLQFE FHPVVDRLED VRLWMLHVKE GEAVAVNCVS QMHKTLYDGT GAAVRDFAGL VRSTNPVAVV
501: IAEQEAEHNS TQLETRVFNS LKYYSAVFDV MHKRLGADSL MRVKIEEVLF GREIRNIVAC EGSHRQERHV GFGQWRRMME QLGFRSLGVS EREVLQSKML
601: LRMYGDGDEE FFNVERSDED GGGVTLRWLD QPLYTVSAWS VGGSS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.