Factsheet for Solyc08g080400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007879	Potato	plastid	98.82	98.82
VIT_02s0025g04000.t01	Wine grape	plastid	71.87	74.39
GSMUA_Achr1P16230_001	Banana	cytosol	34.02	64.89
KRH57249	Soybean	plastid	61.41	62.8
KRH03976	Soybean	mitochondrion, nucleus	60.68	61.58
AT1G63100.2	Thale cress	plastid	55.08	56.84
Bra027620.1-P	Field mustard	plastid	51.4	55.22
CDY49199	Canola	plastid	51.25	55.06
CDY47352	Canola	plastid	51.4	54.79
CDY70213	Canola	plastid	51.84	54.74
CDY45974	Canola	plastid	51.84	54.57
Bra026999.1-P	Field mustard	nucleus, plastid	48.01	54.06
GSMUA_Achr7P05850_001	Banana	mitochondrion	51.69	54.0
GSMUA_Achr1P18840_001	Banana	cytosol	46.83	51.79
Os06t0127800-01	Rice	plastid	42.27	46.52
HORVU7Hr1G010620.1	Barley	cytosol	38.14	46.0
TraesCS7D01G053600.1	Wheat	plastid	41.38	44.82
TraesCS4A01G430600.1	Wheat	plastid	40.65	44.44
Zm00001d045507_P001	Maize	plastid	40.21	44.32
TraesCS7A01G059000.1	Wheat	plastid	40.8	44.18
EER87757	Sorghum	mitochondrion	40.65	43.33
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	48.75	38.4
Solyc07g066250.1.1	Tomato	nucleus	20.62	32.71
Solyc07g043330.1.1	Tomato	plastid	20.32	31.94
Solyc09g066450.1.1	Tomato	cytosol	22.09	30.0
Solyc12g099900.1.1	Tomato	nucleus	20.62	29.91
Solyc01g008910.2.1	Tomato	cytosol	20.77	29.62
Solyc10g086380.1.1	Tomato	nucleus	20.47	27.1
Solyc03g110950.1.1	Tomato	cytosol	20.47	26.23
Solyc11g011260.1.1	Tomato	nucleus	22.39	25.85
Solyc11g017100.1.1	Tomato	cytosol	17.53	25.0
Solyc02g094340.1.1	Tomato	nucleus	24.45	24.41
Solyc10g086370.1.1	Tomato	nucleus	17.82	23.73
Solyc02g085340.1.1	Tomato	cytosol	20.62	22.99
Solyc10g074680.1.1	Tomato	cytosol	24.59	20.22

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009987	GO:GO:0043565	GO:GO:1900459	InterPro:IPR005202	UniProt:K4CP40
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	InterPro:Scarecrow-like_28	EnsemblPlantsGene:Solyc08g080400.1
EnsemblPlants:Solyc08g080400.1.1	InterPro:TF_GRAS	UniParc:UPI000276B8D7	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:63684338..63686377

Molecular Weight (calculated)

75419.0 Da

IEP (calculated)

6.082

GRAVY (calculated)

-0.387

Length

679 amino acids

Sequence
(BLAST)

001: MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQSISRPVGL SVEKPIEAKN STCSLKQNIR LPPSSTSAQT SYVEGRRESK
101: DEFWEKGRSL KRYAEQGCID DESCMSRAKR KKSNRKSGDS SEDGYDLSLS QLGGGDFWLQ SGFNAARSVP LIAGLHPPQA APFSFSCSGE EESVCYVPNE
201: VISPPLPMSN NPWIESVVTE ITNFGDKNVS TSQDLAREAS VSSASLDSHG LVLRPNENLG EHEVGNGSRL PNPNDRGEVV TAHNGHNNHR EDDAAELISL
301: LVSCVEAIGS RNVTGVNQLI ARLGQLASPR GSPVSRLTAY FTEALALRVA RIWPHIFHII PPRDLDRLDD DSSTALRLLN QVSPIPKFIH FTSNEILLRA
401: FEGKDRVHII DFDIKQGLQW PSLFQSLASR PNPPTHVRIT GIGESKQDLV ETGDRLAEFA EALNLAFEFH PVVDRLEDVR LWMLHVKEGE SVAVNCVLQM
501: HRLLYDSSGG ILRDFLGLIR STNPTIILMA EQEAEHNEPS LEARLVNSLR YYAAVFDSIA FGLPLDSPAR IKIEELFARD IRNIIACEGR DRTERHECFG
601: KWRKLMEQGG FRCTGITERE LLQSQMLLKM YSCEDYRVTK QGNDDAALTL SWLDQPLCTV SAWTPIDAAG SSSSYYQPS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.