Factsheet for Solyc07g043330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g092370.1.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G41920.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G41920.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G41920.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G41920.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT5G41920.1	Solyc02g092370.1.1	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030652	Potato	cytosol	92.36	97.08
VIT_03s0017g01660.t01	Wine grape	plastid	71.99	70.36
KRH29089	Soybean	mitochondrion	69.44	67.87
Bra025456.1-P	Field mustard	mitochondrion	37.73	66.26
CDY64484	Canola	mitochondrion	37.73	66.26
KRH24117	Soybean	plastid	66.67	64.72
AT5G41920.1	Thale cress	cytosol	58.56	62.47
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	43.06	60.39
Os07t0567700-02	Rice	cytosol	63.66	60.18
CDY27670	Canola	cytosol	56.02	59.9
TraesCS2D01G208500.1	Wheat	cytosol	61.57	59.24
TraesCS2B01G228000.1	Wheat	cytosol	61.57	59.24
TraesCS2A01G200700.1	Wheat	cytosol	61.34	58.89
Zm00001d021826_P001	Maize	cytosol	61.11	58.41
KXG36498	Sorghum	cytosol, plastid	61.57	57.83
HORVU0Hr1G003230.2	Barley	mitochondrion	58.1	54.21
Solyc09g066450.1.1	Tomato	cytosol	40.51	35.0
Solyc07g066250.1.1	Tomato	nucleus	29.86	30.14
Solyc01g008910.2.1	Tomato	cytosol	31.94	28.99
Solyc12g099900.1.1	Tomato	nucleus	31.02	28.63
Solyc10g074680.1.1	Tomato	cytosol	52.78	27.6
Solyc03g110950.1.1	Tomato	cytosol	32.18	26.23
Solyc11g017100.1.1	Tomato	cytosol	27.08	24.58
Solyc02g094340.1.1	Tomato	nucleus	36.11	22.94
Solyc11g011260.1.1	Tomato	nucleus	30.56	22.45
Solyc10g086380.1.1	Tomato	nucleus	25.93	21.83
Solyc10g086370.1.1	Tomato	nucleus	25.0	21.18
Solyc08g080400.1.1	Tomato	plastid	31.94	20.32
Solyc02g085340.1.1	Tomato	cytosol	28.01	19.87

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0048366	GO:GO:0090610	InterPro:IPR005202	UniProt:K4CEJ2
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF35	EnsemblPlantsGene:Solyc07g043330.1	EnsemblPlants:Solyc07g043330.1.1
InterPro:TF_GRAS	UniParc:UPI000276C3EE	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:57032433..57033731

Molecular Weight (calculated)

47954.3 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.088

Length

432 amino acids

Sequence
(BLAST)

001: MLFVSAIPIN HTSSYSSSMS SKRSISEFTP VSDEPQLLTK RPRNERGEEE EEEGEELLLV DADSIGLRLL GLLLQCAEFV AMENLDEAAD LLPEIAELSS
101: PFGSSAERVA AYFAESLSAR IISSHLRFYS PLNLKSLTLT HSQKLFTALQ SYNTISPLIK FSHYTANQAI YQALEGEDHV HVIDLDIMQG LQWPGLFQIL
201: SSRSRKLRSI RITGVGSSME LLESTGRRLT EFANSFGLPF EFQPFEGKIG HITDLNQLGV KIGETTVVNW MHHCLYNITG SDLGTFRLLT LLRPKLITLV
301: EQDLSHGGNF LSRFVEALHY YSALFDALGD GLSEESAERH RVEQQLFGSE IRNIVAVGGP KRTGEVPVER WGDELKRIGF LPVSLSGTPA AQASLLLGMF
401: PRGYTLVEEN GCLKLGWKDL SLLTASAWQP CD

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.