Factsheet for Solyc02g092370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075250.2.1
Solyc07g043330.1.1
Solyc07g053570.2.1
Solyc09g007550.2.1
Solyc09g091280.2.1
Solyc10g074680.1.1
Solyc10g084180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	Solyc07g053570.2.1	AT1G03840.1	17785527
AT4G37650.1	Solyc09g091280.2.1	AT3G12280.1	22921914
AT4G37650.1	Solyc10g074680.1.1	AT3G54220.1	17446396
AT4G37650.1	Solyc10g074680.1.1	AT3G54220.1	17785527
AT4G37650.1	Solyc10g074680.1.1	AT3G54220.1	18500650
AT4G37650.1	Solyc10g074680.1.1	AT3G54220.1	22921914
AT4G37650.1	Solyc06g075250.2.1	AT5G03150.1	17785527
AT4G37650.1	Solyc09g007550.2.1	AT5G03150.1	17785527
AT4G37650.1	Solyc10g084180.1.1	AT5G03150.1	17785527
AT4G37650.1	Solyc07g043330.1.1	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055239	Potato	nucleus	78.3	87.25
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	72.19	74.09
KRH77129	Soybean	plastid	65.29	69.54
KRH28353	Soybean	plastid	65.29	68.67
KRH58109	Soybean	cytosol, plastid	63.31	64.33
KRH04424	Soybean	plastid	63.51	64.02
Bra010606.1-P	Field mustard	nucleus	53.85	58.33
CDX72645	Canola	cytosol, plastid	58.97	56.2
AT4G37650.1	Thale cress	cytosol, plastid	58.78	56.12
Bra017842.1-P	Field mustard	cytosol, plastid	58.78	56.02
CDY50264	Canola	nucleus, plastid	52.47	56.0
Bra011777.1-P	Field mustard	cytosol, plastid	58.78	55.91
CDY44032	Canola	cytosol, plastid	57.79	55.81
TraesCS2D01G194800.1	Wheat	cytosol, plastid	41.81	55.5
Solyc08g014030.1.1	Tomato	cytosol	45.17	54.78
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	51.48	49.06
GSMUA_Achr8P30950_001	Banana	mitochondrion	51.28	49.06
GSMUA_Achr4P16460_001	Banana	nucleus	50.89	48.59
Zm00001d021973_P001	Maize	nucleus	52.47	44.93
Zm00001d006721_P001	Maize	nucleus	51.48	44.54
OQU90176	Sorghum	nucleus, plastid	50.49	42.81
TraesCS2A01G192600.1	Wheat	plastid	50.1	42.76
Os07t0586900-01	Rice	plastid	50.1	42.19
TraesCS2B01G214600.1	Wheat	nucleus, plastid	49.31	42.02
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	47.53	39.97
HORVU2Hr1G035730.4	Barley	cytosol, plastid	45.36	38.59
Zm00001d029607_P001	Maize	plastid	47.14	37.94
EER94653	Sorghum	plastid	48.72	37.2
Solyc07g052960.1.1	Tomato	cytosol	25.44	30.07
Solyc02g092570.1.1	Tomato	plastid	23.08	26.71
Solyc03g123400.1.1	Tomato	extracellular, nucleus	21.1	19.74
Solyc12g049320.1.1	Tomato	nucleus	7.5	14.23

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008356	GO:GO:0009058	GO:GO:0009956	GO:GO:0009987	GO:GO:0043565	GO:GO:0045930
GO:GO:0048366	GO:GO:0055072	InterPro:IPR005202	UniProt:K4BD33	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	EnsemblPlantsGene:Solyc02g092370.1	EnsemblPlants:Solyc02g092370.1.1	InterPro:TF_GRAS
UniParc:UPI0002767F4E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:53456887..53458410

Molecular Weight (calculated)

57402.1 Da

IEP (calculated)

5.846

GRAVY (calculated)

-0.512

Length

507 amino acids

Sequence
(BLAST)

001: MDTLFRLVSL QQQQQQQSDQ YSFNSSRTSS SSRSSNKQNS TYNYHPHHNH QDEECFNFFM DEDDFSSSSS KHNNYPPPHY NQYQQISTPT TTSSTPTHQS
101: QSQYDHQFSP ARDLNLEFAS SFSGKWATDI LLETSRAIAD KNSTRVQQLM WMLNELSSPY GDTEQKLASY FLQALFSRMT DSGERCYRTL LSASDKTCSF
201: ESTRKLVLKF QEVSPWTTFG HVASNGAIME ALEGESKLHI IDISNTYCTQ WPTLLEALAT RTDETPHLRL TTVVAAASGG AASVQKVMKE IGSRMEKFAR
301: LMGVPFKFNV IHHVGNLSEL DMGALDIKEE EALAINCIGA LHSVTPAGNR RDYLISLFRR LQPRIVTIVE EEADLDVGVD GFDFVNGFQE CLKWIRVYFE
401: SLDESFSKTS NERLMLERQA GRSIVDLLAC PPSESMERRE TGAKWSHRMH AGGFSPVLYS DEVCDDVRAL LRRYKDGWSM GQCGGDSAGI FLSWKEQPVV
501: WASAWKP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.