Factsheet for Solyc03g123400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089692	Potato	nucleus	79.15	79.15
VIT_09s0002g01190.t01	Wine grape	nucleus	55.35	55.05
KRH47610	Soybean	cytosol	51.29	51.29
KRH06192	Soybean	nucleus	50.37	50.28
HORVU2Hr1G104160.1	Barley	cytosol	21.77	44.87
AT3G13840.1	Thale cress	cytosol	41.51	44.12
HORVU2Hr1G104170.1	Barley	cytosol	11.44	43.66
CDX97537	Canola	cytosol	38.38	40.86
Bra027378.1-P	Field mustard	cytosol	38.19	40.59
HORVU5Hr1G117780.1	Barley	mitochondrion	30.26	38.5
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	31.73	38.48
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	26.57	38.2
TraesCS2A01G460200.1	Wheat	nucleus	35.79	37.6
TraesCS2D01G460500.1	Wheat	nucleus	35.42	37.21
TraesCS2B01G481900.1	Wheat	nucleus	35.61	37.19
Zm00001d029474_P001	Maize	cytosol	35.98	37.07
Os03t0408600-01	Rice	nucleus	35.42	36.71
EER97527	Sorghum	nucleus	36.53	36.0
Zm00001d047266_P001	Maize	nucleus	35.42	35.89
HORVU7Hr1G060780.1	Barley	cytosol, plastid	31.55	35.55
OQU92409	Sorghum	cytosol	35.79	34.95
Zm00001d022116_P001	Maize	nucleus	33.95	33.76
HORVU7Hr1G115720.3	Barley	mitochondrion	27.49	33.04
HORVU2Hr1G040860.3	Barley	mitochondrion	13.47	31.74
Zm00001d048624_P001	Maize	nucleus	11.07	27.27
Solyc08g014030.1.1	Tomato	cytosol	19.37	25.12
Solyc07g052960.1.1	Tomato	cytosol	19.0	24.01
Solyc02g092570.1.1	Tomato	plastid	19.37	23.97
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	19.74	21.1
Solyc12g049320.1.1	Tomato	nucleus	7.2	14.61

Protein Annotations

MapMan:15.5.12	MapMan:26.9.1.6.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009987	GO:GO:0042446	GO:GO:0043565	GO:GO:2000032	InterPro:IPR005202
UniProt:K4BN39	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1
EnsemblPlantsGene:Solyc03g123400.1	EnsemblPlants:Solyc03g123400.1.1	InterPro:TF_GRAS	UniParc:UPI00027659F3	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:70264775..70266403

Molecular Weight (calculated)

60738.6 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.435

Length

542 amino acids

Sequence
(BLAST)

001: MAIEEPEPNS NSDPISEWLA STLSDVPSFF HEPYSYADDL NFYADPWWVP DQEDQIVNHN IIIDNTCNSF NISSPVNTAI NNIPLEPIIL DHPQPVDLSK
101: KRKKSDQNPK ASKKNHKLQI NEAAHAPTIV DQEGVQLKKS IGPKRVTTGN NSNNKEGRWA EHLLNPCAAA ITVGNMNRVQ HLLYVLHELA SFTGDANHRL
201: AAHGLRALTH HLSSPGSSSA SSGTIGVTNF SSANHKFFRD SLINFIDVSP WFRIPNNIAN SSVLQIIGQQ DRLKNLHILD IGVSHGFQWP TLLEELTRRS
301: GGPPPLVRLT VITPTTENGE LTGTPFVIGP PGYDFSSQLL AYAKAININL QINRLDNFPL QNLNSQIINS SSDETLVICA QFRLHNLNHT IPDDRTDLLK
401: ILKSLDPKGL VLSENNTECS CNSCGDFATT FSRRVEYLWR FLDSTSVAYK GRESEERRMM EGEAAKALTN MGEMNERKEK WCERMRSAGF VKAVFGEDAI
501: DGARALLRKY DSNWEIRVEE KDGCVDLWWK GQPISFCSLW KI

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.