CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G104170.1	Barley	cytosol	19.1	74.65
Zm00001d029474_P001	Maize	cytosol	66.67	70.34
Zm00001d047266_P001	Maize	nucleus	66.67	69.16
HORVU2Hr1G104160.1	Barley	cytosol	32.07	67.68
Os03t0408600-01	Rice	nucleus	60.54	64.24
TraesCS2A01G460200.1	Wheat	nucleus	59.1	63.57
TraesCS2B01G481900.1	Wheat	nucleus	59.1	63.2
TraesCS2D01G460500.1	Wheat	nucleus	58.74	63.18
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	42.34	62.33
HORVU5Hr1G117780.1	Barley	mitochondrion	47.03	61.27
HORVU7Hr1G060780.1	Barley	cytosol, plastid	47.93	55.3
HORVU2Hr1G040860.3	Barley	mitochondrion	21.26	51.3
HORVU7Hr1G115720.3	Barley	mitochondrion	39.82	49.0
EER97527	Sorghum	nucleus	46.67	47.09
PGSC0003DMT400036577	Potato	cytosol	10.63	45.38
Zm00001d048624_P001	Maize	nucleus	16.58	41.82
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	32.61	40.49
VIT_09s0002g01190.t01	Wine grape	nucleus	35.68	36.33
KRH47610	Soybean	cytosol	34.95	35.79
Solyc03g123400.1.1	Tomato	extracellular, nucleus	34.95	35.79
Bra027378.1-P	Field mustard	cytosol	32.07	34.9
AT3G13840.1	Thale cress	cytosol	31.89	34.71
PGSC0003DMT400089692	Potato	nucleus	33.87	34.69
KRH06192	Soybean	nucleus	33.87	34.62
CDX97537	Canola	cytosol	31.71	34.58
EER97471	Sorghum	cytosol	23.24	28.35
EES18455	Sorghum	cytosol	19.46	25.47
OQU90176	Sorghum	nucleus, plastid	23.06	21.4
KXG33889	Sorghum	cytosol	11.53	19.94
EER94653	Sorghum	plastid	23.6	19.73

Protein Annotations

MapMan:15.5.12	MapMan:26.9.1.6.1	UniProt:A0A1Z5S993	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987
GO:GO:0042446	GO:GO:2000032	InterPro:IPR005202	EnsemblPlants:OQU92409	ProteinID:OQU92409	ProteinID:OQU92409.1
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1	EnsemblPlantsGene:SORBI_3001G341400
InterPro:TF_GRAS	UniParc:UPI000B4248C8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:62864836..62867833

Molecular Weight (calculated)

57683.6 Da

IEP (calculated)

7.236

GRAVY (calculated)

-0.206

Length

555 amino acids

Sequence
(BLAST)

001: MSMHISSSPC KIACMKPMSC HEQEHPELAA TTTNSSAFDW LEDSISFLTA DVDIAAGYGW WSDPAAVQQD DIGSVVAQTL SPPAPLLTTT STSPPLAHTS
101: PSIASPAVSS PSEPSSTKKR KSPAHRASAH SGSNQRRRAD QDRPAGAGGG GGSKKGGSKG GGAGSDRDTR WAEQLLNPCA AAVEAGNLSR VQHLFYVLGE
201: LASFSGDANH RLAAHGLHAL ARRLPAAVGP AAAATVRVPP CECPTPAFAG AEPRLFRASL IRFHEVSPWF ALPNALANAA IAQAASRGGP AAEPRPLHVV
301: DLGVSHGVQW PTLLESLTRQ PGGRAPPSVR LTVAGAAATP PAPFSASPPG YDFSPHLIRY AKSINLQLAV SRAASLDSVQ HGFASPPGGG EALVVCLQFR
401: LGHASADERT EILRKVRGLN PELVVVSELD GGGDGTAAGE FTARLELLWR FLESTSAAFK GRDGDERRLL EAEAGTSVAS EAAGAGKEAW RERMAAAGFE
501: ESAFGDEAVE SAKSLLRKYD GGWEMSASGA AGAVALRWKG QPVSFCSLWR PACSG

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.