Factsheet for HORVU5Hr1G097760.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G104160.1	Barley	cytosol	55.7	79.85
HORVU5Hr1G117780.1	Barley	mitochondrion	77.72	68.78
TraesCS2D01G460500.1	Wheat	nucleus	79.05	57.75
TraesCS2B01G481900.1	Wheat	nucleus	79.05	57.42
TraesCS2A01G460200.1	Wheat	nucleus	76.92	56.2
HORVU2Hr1G040860.3	Barley	mitochondrion	33.95	55.65
HORVU7Hr1G060780.1	Barley	cytosol, plastid	66.05	51.77
HORVU7Hr1G115720.3	Barley	mitochondrion	58.36	48.78
Zm00001d029474_P001	Maize	cytosol	64.46	46.2
HORVU2Hr1G104170.1	Barley	cytosol	17.24	45.77
Os03t0408600-01	Rice	nucleus	61.54	44.36
Zm00001d047266_P001	Maize	nucleus	60.21	42.43
OQU92409	Sorghum	cytosol	62.33	42.34
Zm00001d048624_P001	Maize	nucleus	18.3	31.36
VIT_09s0002g01190.t01	Wine grape	nucleus	40.85	28.26
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	33.16	27.96
AT3G13840.1	Thale cress	cytosol	36.6	27.06
Solyc03g123400.1.1	Tomato	extracellular, nucleus	38.2	26.57
KRH47610	Soybean	cytosol	37.67	26.2
PGSC0003DMT400089692	Potato	nucleus	37.4	26.01
KRH06192	Soybean	nucleus	37.4	25.97
CDX97537	Canola	cytosol	34.22	25.34
Bra027378.1-P	Field mustard	cytosol	34.22	25.29
HORVU1Hr1G066390.1	Barley	cytosol	22.55	20.48
HORVU2Hr1G035120.1	Barley	cytosol	24.4	20.09
PGSC0003DMT400036577	Potato	cytosol	5.84	16.92
HORVU2Hr1G035730.4	Barley	cytosol, plastid	21.22	13.42

Protein Annotations

EnsemblPlants:HORVU5Hr1G097760.3	EnsemblPlantsGene:HORVU5Hr1G097760	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:SCL29/NSP1	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000B47412C
UniProt:A0A287SFU0	MapMan:15.5.12	MapMan:26.9.1.6.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:605425257..605426702

Molecular Weight (calculated)

40238.4 Da

IEP (calculated)

9.808

GRAVY (calculated)

-0.046

Length

377 amino acids

Sequence
(BLAST)

001: APPPCAFTKL TKRPSLHLRR RLRVQLPLPV RLAVSGSGHG SRNQRRRTEQ DRPGGGKKGG GAGSDRDARW AEQLLGPCAV AVEARNLSHV QHLFYVLGEL
101: AAFSGDANHR LAAYGLRALS LRLPAAVGPA AAAAVRVPAA CECPTPSFAG TEPRLFHASL IKFHEVSPWF TLPNTLANAA ISQLASAAPR PLHLIDIGVS
201: HGVQWPTLLE SLTRMAAGRA PLSVRLTVVA TPPVPFSASP PGYDFSPHLL PYAKSIKLDL EIGRAASLDS AHGFCTAPDE ALVVCLQFRL GHVTAEERTD
301: IIRRVKDLKP QLVVLSELDV GGNDSAAGEF TARLELLWRF LESTHAAFKG RDGEDRRLLE AEAGTAVAVA AAREAVG

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.