Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g123400.1.1 | Tomato | extracellular, nucleus | 79.15 | 79.15 |
| PGSC0003DMT400036577 | Potato | cytosol | 18.27 | 76.15 |
| VIT_09s0002g01190.t01 | Wine grape | nucleus | 56.09 | 55.78 |
| KRH06192 | Soybean | nucleus | 50.18 | 50.09 |
| KRH47610 | Soybean | cytosol | 49.82 | 49.82 |
| AT3G13840.1 | Thale cress | cytosol | 42.07 | 44.71 |
| HORVU2Hr1G104160.1 | Barley | cytosol | 21.59 | 44.49 |
| HORVU2Hr1G104170.1 | Barley | cytosol | 11.25 | 42.96 |
| CDX97537 | Canola | cytosol | 38.38 | 40.86 |
| Bra027378.1-P | Field mustard | cytosol | 38.19 | 40.59 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 33.21 | 40.27 |
| HORVU5Hr1G117780.1 | Barley | mitochondrion | 29.89 | 38.03 |
| HORVU5Hr1G097760.3 | Barley | mitochondrion, plastid | 26.01 | 37.4 |
| TraesCS2B01G481900.1 | Wheat | nucleus | 34.87 | 36.42 |
| Os03t0408600-01 | Rice | nucleus | 35.06 | 36.33 |
| TraesCS2D01G460500.1 | Wheat | nucleus | 34.5 | 36.24 |
| Zm00001d029474_P001 | Maize | cytosol | 35.06 | 36.12 |
| TraesCS2A01G460200.1 | Wheat | nucleus | 34.13 | 35.85 |
| HORVU7Hr1G060780.1 | Barley | cytosol, plastid | 31.18 | 35.14 |
| EER97527 | Sorghum | nucleus | 35.61 | 35.09 |
| Zm00001d047266_P001 | Maize | nucleus | 34.32 | 34.77 |
| Zm00001d022116_P001 | Maize | nucleus | 34.5 | 34.31 |
| OQU92409 | Sorghum | cytosol | 34.69 | 33.87 |
| HORVU7Hr1G115720.3 | Barley | mitochondrion | 27.31 | 32.82 |
| HORVU2Hr1G040860.3 | Barley | mitochondrion | 13.47 | 31.74 |
| Zm00001d048624_P001 | Maize | nucleus | 10.7 | 26.36 |
| PGSC0003DMT400067360 | Potato | cytosol | 19.19 | 24.36 |
| PGSC0003DMT400037884 | Potato | cytosol | 18.82 | 24.34 |
| PGSC0003DMT400055239 | Potato | nucleus | 20.3 | 24.18 |
| PGSC0003DMT400064187 | Potato | plastid | 19.19 | 23.74 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400089692 | EnsemblPlantsGene:PGSC0003DMG400039263 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:SCL29/NSP1 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF40 | PFAM:PF03514 | PFscan:PS50985 | PGSC:PGSC0003DMG400039263 | SEG:seg |
| UniParc:UPI000296C8D6 | UniProt:M1DIQ1 | MapMan:15.5.12 | MapMan:26.9.1.6.1 | : | : |
Description
Nodulation signaling pathway 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400039263]
Coordinates
chr3:-:61501169..61502797
Molecular Weight (calculated)
61005.8 Da
IEP (calculated)
6.006
GRAVY (calculated)
-0.490
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIEEPEPNS NSDPISEWLA STLSDVPSFL DEPYSYTDDL NFYADSWWVP DQDDQIVNHN IIIDNTCNSF NISSPVNTAI SNIPLEPIIL DQPQPVDLSK
101: KRKISDQNPK TSKKNHNRQI NEAENAHTIG DQGGVQVRRP KRVTTKSTGN NSNNKEGRWA EHLLNPCAAA ITVGNMNRVQ HLLYVLHELA SFTGDANHRL
201: AAHGLRALTH HLSSPGSSSA SSGTIGVTNF SSANHKFFRD SLINFIDISP WFRIPNNIAN SSVLQIIGEQ DRLKNLHILD IGVSHGFQWP TLLEELTRRS
301: GGPPPLVRLT VITPTTENGE LRGTPFVIGP PGYDFSSQLL AYAKAININL QINRLDNFPL QNLNSQIINS TSDETLVICA QFRLHNLNHT IPDDRTDLLK
401: ILKSLDPKGL VLSENNTECS CNSCGDFATM FSRRVEYLWR FLDSTSVAYK GRESEERKMM EGEAAKALTN MGEMNERKEK WCERMRNVGF VKEVFGEDAI
501: DGARALLRKY DSNWEMRVEE KDGCVDLWWK GQPISFCSLW KI
101: KRKISDQNPK TSKKNHNRQI NEAENAHTIG DQGGVQVRRP KRVTTKSTGN NSNNKEGRWA EHLLNPCAAA ITVGNMNRVQ HLLYVLHELA SFTGDANHRL
201: AAHGLRALTH HLSSPGSSSA SSGTIGVTNF SSANHKFFRD SLINFIDISP WFRIPNNIAN SSVLQIIGEQ DRLKNLHILD IGVSHGFQWP TLLEELTRRS
301: GGPPPLVRLT VITPTTENGE LRGTPFVIGP PGYDFSSQLL AYAKAININL QINRLDNFPL QNLNSQIINS TSDETLVICA QFRLHNLNHT IPDDRTDLLK
401: ILKSLDPKGL VLSENNTECS CNSCGDFATM FSRRVEYLWR FLDSTSVAYK GRESEERKMM EGEAAKALTN MGEMNERKEK WCERMRNVGF VKEVFGEDAI
501: DGARALLRKY DSNWEMRVEE KDGCVDLWWK GQPISFCSLW KI
001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
Arabidopsis Description
SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.