CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06192	Soybean	nucleus	84.13	83.98
PGSC0003DMT400036577	Potato	cytosol	15.68	65.38
VIT_09s0002g01190.t01	Wine grape	nucleus	55.54	55.23
Solyc03g123400.1.1	Tomato	extracellular, nucleus	51.29	51.29
PGSC0003DMT400089692	Potato	nucleus	49.82	49.82
HORVU2Hr1G104160.1	Barley	cytosol	22.32	46.01
AT3G13840.1	Thale cress	cytosol	41.33	43.92
Bra027378.1-P	Field mustard	cytosol	40.77	43.33
CDX97537	Canola	cytosol	40.59	43.22
HORVU2Hr1G104170.1	Barley	cytosol	11.07	42.25
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	32.1	38.93
HORVU5Hr1G117780.1	Barley	mitochondrion	30.07	38.26
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	26.2	37.67
TraesCS2A01G460200.1	Wheat	nucleus	35.24	37.02
HORVU2Hr1G040860.3	Barley	mitochondrion	15.68	36.96
Os03t0408600-01	Rice	nucleus	35.24	36.52
TraesCS2D01G460500.1	Wheat	nucleus	34.13	35.85
HORVU7Hr1G060780.1	Barley	cytosol, plastid	31.73	35.76
TraesCS2B01G481900.1	Wheat	nucleus	33.95	35.45
Zm00001d029474_P001	Maize	cytosol	33.95	34.98
OQU92409	Sorghum	cytosol	35.79	34.95
Zm00001d047266_P001	Maize	nucleus	33.58	34.02
EER97527	Sorghum	nucleus	33.21	32.73
Zm00001d022116_P001	Maize	nucleus	32.47	32.29
HORVU7Hr1G115720.3	Barley	mitochondrion	26.75	32.15
KRH23228	Soybean	cytosol	21.77	26.64
Zm00001d048624_P001	Maize	nucleus	10.7	26.36
KRH10104	Soybean	cytosol	21.03	26.09
KRH77129	Soybean	plastid	22.14	25.21
KRH28353	Soybean	plastid	21.96	24.69
KRH04459	Soybean	plastid	21.59	24.27
KRH58109	Soybean	cytosol, plastid	22.14	24.05
KRH04424	Soybean	plastid	21.96	23.66
KRH58050	Soybean	cytosol	21.96	22.67
KRH26849	Soybean	cytosol	18.45	21.74
KRH22503	Soybean	cytosol	18.45	21.41

Protein Annotations

EntrezGene:100806550	MapMan:15.5.12	MapMan:26.9.1.6.1	EMBL:ACUP02004156	EnsemblPlantsGene:GLYMA_07G039400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0043565
GO:GO:2000032	UniProt:I1KHC2	InterPro:IPR005202	EnsemblPlants:KRH47610	ProteinID:KRH47610	ProteinID:KRH47610.1
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1	InterPro:TF_GRAS
UniParc:UPI0002338395	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:3231998..3234448

Molecular Weight (calculated)

59985.7 Da

IEP (calculated)

5.783

GRAVY (calculated)

-0.612

Length

542 amino acids

Sequence
(BLAST)

001: MIMEPNPTPD HSLDWFEGSV SYFPPFLDYP YNSSDIQEYQ LWEQDIASNY QTDTNTSSPN ATNIVTITTP LETCDSNNLP LSDLPKKRSA TDESSPKPPQ
101: NHKHKKIKSK PRNNEADNGD AEATTTTTAT VRKSGGNKKG GAKANGNNCN NKDGRWAEQL LNPCAAAITG GNLNRVQHLL YVLHELASPT GDANHRLAAH
201: GLKALTQHLS SSPTSTSSGS ITFASAEPRF FQKTLLKFYE VSPWFSFPNN IANASILQVL GEDTDNSRTL HILDIGVSHG MQWPTFLEAL SRRAGGPPPL
301: VRLTVVTASS STENDTPFCI GPPGDNFSSR LLGFAQSMNV NLQINKLDNC PLHSLNAQSV DASPDEIFVV CAQFRLHQLN HNAPDERSKF LTVLRNMEPK
401: GVILSDNNLG CCCNCCGDFA TGFSRRVEYL WRFLDSTSSA FKGRESEERR VMEGEAAKAL TNQRETNEGK EKWCERMKEA GFVEEVFGED AIDGGRALLR
501: KYESNWEMKV EDDNRSVGLW WKGQSVSFCS LWKLDGNDQS ST

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.