Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97537 | Canola | cytosol | 73.73 | 73.87 |
| Bra027378.1-P | Field mustard | cytosol | 71.57 | 71.57 |
| PGSC0003DMT400036577 | Potato | cytosol | 13.73 | 53.85 |
| VIT_09s0002g01190.t01 | Wine grape | nucleus | 46.86 | 43.85 |
| PGSC0003DMT400089692 | Potato | nucleus | 44.71 | 42.07 |
| HORVU2Hr1G104170.1 | Barley | cytosol | 11.57 | 41.55 |
| Solyc03g123400.1.1 | Tomato | extracellular, nucleus | 44.12 | 41.51 |
| KRH06192 | Soybean | nucleus | 44.12 | 41.44 |
| KRH47610 | Soybean | cytosol | 43.92 | 41.33 |
| HORVU2Hr1G104160.1 | Barley | cytosol | 20.78 | 40.3 |
| HORVU5Hr1G097760.3 | Barley | mitochondrion, plastid | 27.06 | 36.6 |
| HORVU5Hr1G117780.1 | Barley | mitochondrion | 30.39 | 36.38 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 31.57 | 36.02 |
| TraesCS2A01G460200.1 | Wheat | nucleus | 35.49 | 35.08 |
| Os03t0408600-01 | Rice | nucleus | 35.69 | 34.8 |
| Zm00001d029474_P001 | Maize | cytosol | 35.88 | 34.79 |
| TraesCS2D01G460500.1 | Wheat | nucleus | 35.1 | 34.69 |
| TraesCS2B01G481900.1 | Wheat | nucleus | 35.29 | 34.68 |
| Zm00001d047266_P001 | Maize | nucleus | 35.29 | 33.64 |
| HORVU2Hr1G040860.3 | Barley | mitochondrion | 15.1 | 33.48 |
| HORVU7Hr1G060780.1 | Barley | cytosol, plastid | 30.78 | 32.64 |
| EER97527 | Sorghum | nucleus | 34.51 | 32.0 |
| OQU92409 | Sorghum | cytosol | 34.71 | 31.89 |
| Zm00001d022116_P001 | Maize | nucleus | 33.73 | 31.56 |
| HORVU7Hr1G115720.3 | Barley | mitochondrion | 26.67 | 30.16 |
| AT3G49950.1 | Thale cress | mitochondrion | 21.96 | 27.32 |
| AT5G67411.1 | Thale cress | cytosol, mitochondrion, nucleus | 8.82 | 22.28 |
| AT4G37650.1 | Thale cress | cytosol, plastid | 21.96 | 21.09 |
| Zm00001d048624_P001 | Maize | nucleus | 9.02 | 20.91 |
Protein Annotations
| MapMan:15.5.12 | MapMan:26.9.1.6.1 | EntrezGene:820596 | UniProt:A0A178VGN4 | ProteinID:AEE75423.1 | ArrayExpress:AT3G13840 |
| EnsemblPlantsGene:AT3G13840 | RefSeq:AT3G13840 | TAIR:AT3G13840 | RefSeq:AT3G13840-TAIR-G | EnsemblPlants:AT3G13840.1 | TAIR:AT3G13840.1 |
| ProteinID:BAB02908.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0042446 | GO:GO:0043565 | GO:GO:2000032 | InterPro:IPR005202 | RefSeq:NP_188000.1 |
| ProteinID:OAP04701.1 | PFAM:PF03514 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0025022 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF40 | UniProt:Q9LRW3 |
| InterPro:SCL29/NSP1 | InterPro:TF_GRAS | UniParc:UPI000009D028 | SEG:seg | : | : |
Description
SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
Coordinates
chr3:-:4555234..4556982
Molecular Weight (calculated)
57184.3 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.434
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.