Factsheet for Bra027378.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97537	Canola	cytosol	94.51	94.7
AT3G13840.1	Thale cress	cytosol	71.57	71.57
PGSC0003DMT400036577	Potato	cytosol	13.73	53.85
KRH47610	Soybean	cytosol	43.33	40.77
KRH06192	Soybean	nucleus	42.94	40.33
HORVU2Hr1G104170.1	Barley	cytosol	11.18	40.14
VIT_09s0002g01190.t01	Wine grape	nucleus	42.35	39.63
HORVU2Hr1G104160.1	Barley	cytosol	19.8	38.4
Solyc03g123400.1.1	Tomato	extracellular, nucleus	40.59	38.19
PGSC0003DMT400089692	Potato	nucleus	40.59	38.19
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	30.39	34.68
HORVU5Hr1G117780.1	Barley	mitochondrion	28.63	34.27
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	25.29	34.22
Zm00001d029474_P001	Maize	cytosol	34.51	33.46
Os03t0408600-01	Rice	nucleus	34.12	33.27
TraesCS2D01G460500.1	Wheat	nucleus	33.53	33.14
TraesCS2A01G460200.1	Wheat	nucleus	33.14	32.75
HORVU2Hr1G040860.3	Barley	mitochondrion	14.71	32.61
TraesCS2B01G481900.1	Wheat	nucleus	33.14	32.56
Zm00001d047266_P001	Maize	nucleus	33.73	32.15
OQU92409	Sorghum	cytosol	34.9	32.07
Zm00001d022116_P001	Maize	nucleus	33.14	31.01
HORVU7Hr1G060780.1	Barley	cytosol, plastid	29.22	30.98
EER97527	Sorghum	nucleus	33.14	30.73
HORVU7Hr1G115720.3	Barley	mitochondrion	24.31	27.49
Bra036041.1-P	Field mustard	mitochondrion	21.57	26.32
Bra010606.1-P	Field mustard	nucleus	19.61	21.37
Zm00001d048624_P001	Maize	nucleus	9.02	20.91
Bra017842.1-P	Field mustard	cytosol, plastid	21.76	20.86
Bra011777.1-P	Field mustard	cytosol, plastid	21.37	20.45

Protein Annotations

MapMan:15.5.12	MapMan:26.9.1.6.1	EnsemblPlantsGene:Bra027378	EnsemblPlants:Bra027378.1	EnsemblPlants:Bra027378.1-P	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009987	GO:GO:0042446	GO:GO:2000032	InterPro:IPR005202	UniProt:M4EF16
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1	InterPro:TF_GRAS
UniParc:UPI0002547EB9	SEG:seg	:	:	:	:

Description

AT3G13840 (E=3e-214) | scarecrow transcription factor family protein

Coordinates

chrA05:-:20602459..20603991

Molecular Weight (calculated)

57148.1 Da

IEP (calculated)

4.547

GRAVY (calculated)

-0.393

Length

510 amino acids

Sequence
(BLAST)

001: MSLEETEPPS QTLDNVLGWF DDSISLTPLP GFTDSDLLNE FDWSQTLEWD HQTQAQDPGC DFLHSYSQDL DAYIGCEATD LEVVTGVPVI DSDPPPVVVQ
101: LPNDQSKKRN RDELTDAQLV KRSARSKKKA DKSTEVSRKD SNKAERWAEQ LLNPCALAIT ARNSSRVQHY ICVLSELASS CGDSNHRLAS FGLCALKKHI
201: STSFVPSSTL TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILS QEPRDKTDLH ILDIGVSHGM QWPTLLEALC CRPEGPPLQV RITVVSDLTA
301: DIPFSVGPPS YNYASQLIGF ARSLNINLQI SVIDKSQLID TSPHETFIVC AQFRLYQLKN SITDERSEAL KALRSLNPKG VVLCEYNGEG SSSVDFAADF
401: SRKLDYLWKF LDSTSYGFKE ENSEERNLME GEATKVLMSS GDTNEGKEIW YERMRKAGFS AEAFGEDAID GAKSLLRKYD NNWEIKMEDE DTFAGLLWKG
501: EEVSFCSLWK

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.