Factsheet for Os03t0408600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G104170.1	Barley	cytosol	19.89	73.24
HORVU2Hr1G104160.1	Barley	cytosol	32.89	65.4
Zm00001d047266_P001	Maize	nucleus	63.1	61.68
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	44.36	61.54
HORVU5Hr1G117780.1	Barley	mitochondrion	49.9	61.27
Zm00001d029474_P001	Maize	cytosol	61.38	61.03
TraesCS2B01G481900.1	Wheat	nucleus	60.23	60.69
TraesCS2D01G460500.1	Wheat	nucleus	59.85	60.66
OQU92409	Sorghum	cytosol	64.24	60.54
TraesCS2A01G460200.1	Wheat	nucleus	59.27	60.08
HORVU7Hr1G060780.1	Barley	cytosol, plastid	51.43	55.93
HORVU7Hr1G115720.3	Barley	mitochondrion	42.83	49.67
HORVU2Hr1G040860.3	Barley	mitochondrion	20.84	47.39
PGSC0003DMT400036577	Potato	cytosol	10.9	43.85
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	36.71	42.95
Zm00001d048624_P001	Maize	nucleus	17.59	41.82
VIT_09s0002g01190.t01	Wine grape	nucleus	39.58	37.98
AT3G13840.1	Thale cress	cytosol	34.8	35.69
Solyc03g123400.1.1	Tomato	extracellular, nucleus	36.71	35.42
KRH47610	Soybean	cytosol	36.52	35.24
PGSC0003DMT400089692	Potato	nucleus	36.33	35.06
KRH06192	Soybean	nucleus	35.95	34.62
CDX97537	Canola	cytosol	33.27	34.18
Bra027378.1-P	Field mustard	cytosol	33.27	34.12
Os05t0500600-01	Rice	cytosol	22.75	28.0
Os07t0589200-00	Rice	cytosol	22.75	25.16
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	24.47	21.23
Os07t0586900-01	Rice	plastid	23.9	20.76

Protein Annotations

MapMan:15.5.12	MapMan:26.9.1.6.1	ProteinID:AAP12983.1	ProteinID:ABF96542.1	ProteinID:BAS84648.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0042446
GO:GO:0043565	GO:GO:2000032	InterPro:IPR005202	EnsemblPlantsGene:Os03g0408600	EnsemblPlants:Os03t0408600-01	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	UniProt:Q84MQ9	InterPro:SCL29/NSP1	InterPro:TF_GRAS
UniParc:UPI000018F169	SEG:seg	:	:	:	:

Description

NODULATION SIGNALING PATHWAY 1GRAS-domain transcription factor, Strigolactone (SL) biosynthesis (Os03t0408600-01)

Coordinates

chr3:-:16804298..16805869

Molecular Weight (calculated)

54080.5 Da

IEP (calculated)

6.384

GRAVY (calculated)

-0.123

Length

523 amino acids

Sequence
(BLAST)

001: MSYHEEERHG GNGLDWFEES MSSLLAADVD LAGGGGDAGG GGYAWWWAAS PAAQQDDIGS VVAQTLSPPS TAAPAAASPS IASPAASSPS DVPSSSSKKR
101: KSPAHRAPGH TGGKKGGGGK GGGGGSDRDM RWAEQLLNPC AVAVEAGNLS RVQHLFYVLG ELESFSGDAN HRLAAHGLRA LARWLPAAVG PAAAAAVRVP
201: PCSERPTTAF AAAEPRLFRA SLIRFHEVSP WFALPNALAN AAIAQASTCG AAGATPRPLH VVDLGVSHGV QWPTLLESLT RQPGGRAPPS VRLTVVGPGA
301: TATSPVAPFS ASPPGYDFSP HLLRYAKSIN LDLRISRAAT LDDAVPGDDG EALVVCLQFR LGHAAAEERR EVLRKARGLN PELVVLSELD SGVGVVGGDG
401: GSAAGEFAAR LELLWRFLES TSAAFKGKDV EERRLLEAEA GAILAAADVA AAGEGREGWR ERMAAAGFEE APFGAEAVES ARSLLRKYDS GWEMSAPSPA
501: AAAVALRWKG QPVSFCSLWR PAA

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.