Factsheet for GSMUA_Achr10P17570_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036577	Potato	cytosol	14.99	51.54
HORVU2Hr1G104170.1	Barley	cytosol	13.42	42.25
HORVU2Hr1G104160.1	Barley	cytosol	22.6	38.4
Os03t0408600-01	Rice	nucleus	42.95	36.71
VIT_09s0002g01190.t01	Wine grape	nucleus	44.74	36.7
Zm00001d029474_P001	Maize	cytosol	40.72	34.6
EER97527	Sorghum	nucleus	41.61	33.82
HORVU5Hr1G117780.1	Barley	mitochondrion	31.99	33.57
PGSC0003DMT400089692	Potato	nucleus	40.27	33.21
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	27.96	33.16
TraesCS2A01G460200.1	Wheat	nucleus	38.26	33.14
TraesCS2D01G460500.1	Wheat	nucleus	38.03	32.95
Zm00001d047266_P001	Maize	nucleus	39.15	32.71
OQU92409	Sorghum	cytosol	40.49	32.61
TraesCS2B01G481900.1	Wheat	nucleus	37.58	32.37
Zm00001d022116_P001	Maize	nucleus	39.37	32.29
KRH06192	Soybean	nucleus	39.15	32.23
KRH47610	Soybean	cytosol	38.93	32.1
HORVU7Hr1G060780.1	Barley	cytosol, plastid	34.23	31.81
Solyc03g123400.1.1	Tomato	extracellular, nucleus	38.48	31.73
AT3G13840.1	Thale cress	cytosol	36.02	31.57
HORVU2Hr1G040860.3	Barley	mitochondrion	15.66	30.43
Bra027378.1-P	Field mustard	cytosol	34.68	30.39
CDX97537	Canola	cytosol	34.23	30.06
HORVU7Hr1G115720.3	Barley	mitochondrion	28.19	27.94
Zm00001d048624_P001	Maize	nucleus	12.53	25.45
GSMUA_Achr10P...	Banana	plastid	21.7	21.32
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	21.7	21.23
GSMUA_Achr6P07790_001	Banana	plastid	21.48	21.01
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	19.69	20.85
GSMUA_Achr10P...	Banana	cytosol	18.34	20.4
GSMUA_Achr8P30950_001	Banana	mitochondrion	24.16	20.38
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	24.16	20.3
GSMUA_Achr6P21350_001	Banana	cytosol	17.67	19.7
GSMUA_Achr9P02380_001	Banana	cytosol	17.67	19.32
GSMUA_Achr4P16460_001	Banana	nucleus	21.92	18.46

Protein Annotations

MapMan:15.5.12	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0042446	GO:GO:2000032
EnsemblPlantsGene:GSMUA_Achr10G17570_001	EnsemblPlants:GSMUA_Achr10P17570_001	EnsemblPlants:GSMUA_Achr10T17570_001	InterPro:IPR005202	UniProt:M0RJ32	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1	InterPro:TF_GRAS	UniParc:UPI00029495CB
SEG:seg	:	:	:	:	:

Description

Putative Nodulation-signaling pathway 1 protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G17570_001]

Coordinates

chr10:-:24738302..24739894

Molecular Weight (calculated)

48543.9 Da

IEP (calculated)

7.029

GRAVY (calculated)

-0.406

Length

447 amino acids

Sequence
(BLAST)

001: MTFEGGPDPN LSPNRHHHHH VLDWLEDSVS FLSSFLDDSY AGNTADQITN YEWWTQEEDQ ANMIHNPLVS TLATSNNSPL LPQAEISKKR KLSTNPTTPN
101: KTPTHPNRQR IAIEGDGGFE EEGEANKKPA ATGRKGHGKG NAGSSSNGVS KEVRWAEQLL NPCAAAIEAA NISRVRHLFC VLRELQSFSG DANHRLAAHG
201: LRALSNHTSA AGIAIPDRAG TSAATFATTE PKLFRSAIIK SLHVVDIGVS HGVQWPTLLD ALARNPGGAP KLVRLAVAGG AAPPGPFSVA PPGYDFQSHL
301: LRYARSIDLN LRIDHTEDLG AGSVALTVGE TLVVCLLWRF LDSTSAAFKG RESAERRVME GEAARFLETT AEAAAAEGRD LWRERMAAVG FREEAFGEEA
401: LDAGRALLRK YDGNWEMRAA PAEAAVGLWW KGHPVSFCSL WKPHRRN

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.