Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027378.1-P | Field mustard | cytosol | 94.7 | 94.51 |
| AT3G13840.1 | Thale cress | cytosol | 73.87 | 73.73 |
| PGSC0003DMT400036577 | Potato | cytosol | 13.75 | 53.85 |
| KRH47610 | Soybean | cytosol | 43.22 | 40.59 |
| KRH06192 | Soybean | nucleus | 43.03 | 40.33 |
| HORVU2Hr1G104170.1 | Barley | cytosol | 11.2 | 40.14 |
| VIT_09s0002g01190.t01 | Wine grape | nucleus | 42.63 | 39.82 |
| HORVU2Hr1G104160.1 | Barley | cytosol | 19.84 | 38.4 |
| Solyc03g123400.1.1 | Tomato | extracellular, nucleus | 40.86 | 38.38 |
| PGSC0003DMT400089692 | Potato | nucleus | 40.86 | 38.38 |
| HORVU5Hr1G117780.1 | Barley | mitochondrion | 28.68 | 34.27 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 30.06 | 34.23 |
| HORVU5Hr1G097760.3 | Barley | mitochondrion, plastid | 25.34 | 34.22 |
| Zm00001d029474_P001 | Maize | cytosol | 34.97 | 33.84 |
| Os03t0408600-01 | Rice | nucleus | 34.18 | 33.27 |
| TraesCS2D01G460500.1 | Wheat | nucleus | 33.6 | 33.14 |
| TraesCS2A01G460200.1 | Wheat | nucleus | 33.4 | 32.95 |
| HORVU2Hr1G040860.3 | Barley | mitochondrion | 14.73 | 32.61 |
| TraesCS2B01G481900.1 | Wheat | nucleus | 33.2 | 32.56 |
| Zm00001d047266_P001 | Maize | nucleus | 33.6 | 31.96 |
| OQU92409 | Sorghum | cytosol | 34.58 | 31.71 |
| Zm00001d022116_P001 | Maize | nucleus | 33.4 | 31.19 |
| HORVU7Hr1G060780.1 | Barley | cytosol, plastid | 29.47 | 31.18 |
| EER97527 | Sorghum | nucleus | 33.2 | 30.73 |
| HORVU7Hr1G115720.3 | Barley | mitochondrion | 23.97 | 27.05 |
| CDY58198 | Canola | mitochondrion | 22.0 | 26.79 |
| CDY30617 | Canola | mitochondrion | 21.61 | 26.32 |
| CDY12844 | Canola | cytosol, mitochondrion, plastid | 21.22 | 24.94 |
| CDX72645 | Canola | cytosol, plastid | 21.81 | 20.86 |
| CDY50264 | Canola | nucleus, plastid | 19.25 | 20.63 |
| Zm00001d048624_P001 | Maize | nucleus | 8.84 | 20.45 |
| CDY44032 | Canola | cytosol, plastid | 21.02 | 20.38 |
Protein Annotations
| MapMan:15.5.12 | MapMan:26.9.1.6.1 | GO:A0A078E946 | EnsemblPlants:CDX97537 | ProteinID:CDX97537 | ProteinID:CDX97537.1 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0042446 | GO:GO:2000032 | EnsemblPlantsGene:GSBRNA2T00104747001 |
| InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF40 | InterPro:SCL29/NSP1 |
| InterPro:TF_GRAS | UniParc:UPI0004EEE624 | SEG:seg | : | : | : |
Description
BnaA05g25420DScarecrow-like protein 29 [Source:Projected from Arabidopsis thaliana (AT3G13840) UniProtKB/Swiss-Prot;Acc:Q9LRW3]
Coordinates
chrLK031900:+:191653..193182
Molecular Weight (calculated)
57173.0 Da
IEP (calculated)
4.609
GRAVY (calculated)
-0.420
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLEETEPPS QTLDNVLGWF DDSISLTPLP GFTDSDLLNE FDWSQTWEWD HQTQAQDPGC DFLHSYSQDL DAYIGCEATN LEVVTGVPVI DSDPPPVVQL
101: PNDQTKKRNR DELNDPHVVK RSARSKKKAD KSTEVSRKDS NKAERWAEQL LNPCALAITA RNSSRVQHYI CVLSELASSC GDSNHRLASF GLCALKKHIS
201: TSFVPSSTLT FASAEVKMFQ KTLLKFYEVS PWFALPNNMA NSAILQILSQ ETRDKTDLHI LDIGVSHGMQ WPTLLEALCC RPEGPPLQVR ITVVSDLTAD
301: IPFSVGPPSY NYASQLIGFA RSLNINLQIS VIDKSQLIDT SPHETFIVCA QFRLYQLKNS ITDERSEALK ALRSLNPKGV VLCEYNGEGS SSVDFAADFS
401: RKLDYLWKFL DSTSYGFKEE NSEERNLMEG EATKVLMSSG DTNEGKEIWY ERMRKAGFSA EAFGEDAIDG AKSLLRKYDN NWEIKMEDED TFAGLLWKGE
501: EVSFCSLWK
101: PNDQTKKRNR DELNDPHVVK RSARSKKKAD KSTEVSRKDS NKAERWAEQL LNPCALAITA RNSSRVQHYI CVLSELASSC GDSNHRLASF GLCALKKHIS
201: TSFVPSSTLT FASAEVKMFQ KTLLKFYEVS PWFALPNNMA NSAILQILSQ ETRDKTDLHI LDIGVSHGMQ WPTLLEALCC RPEGPPLQVR ITVVSDLTAD
301: IPFSVGPPSY NYASQLIGFA RSLNINLQIS VIDKSQLIDT SPHETFIVCA QFRLYQLKNS ITDERSEALK ALRSLNPKGV VLCEYNGEGS SSVDFAADFS
401: RKLDYLWKFL DSTSYGFKEE NSEERNLMEG EATKVLMSSG DTNEGKEIWY ERMRKAGFSA EAFGEDAIDG AKSLLRKYDN NWEIKMEDED TFAGLLWKGE
501: EVSFCSLWK
001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
Arabidopsis Description
SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.