Factsheet for TraesCS2D01G460500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G481900.1	Wheat	nucleus	97.29	96.72
HORVU2Hr1G104170.1	Barley	cytosol	26.16	95.07
HORVU2Hr1G104160.1	Barley	cytosol	44.19	86.69
TraesCS2A01G460200.1	Wheat	nucleus	84.69	84.69
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	57.75	79.05
HORVU5Hr1G117780.1	Barley	mitochondrion	62.98	76.29
HORVU7Hr1G060780.1	Barley	cytosol, plastid	65.12	69.85
Zm00001d047266_P001	Maize	nucleus	64.73	62.43
HORVU7Hr1G115720.3	Barley	mitochondrion	53.88	61.64
Os03t0408600-01	Rice	nucleus	60.66	59.85
OQU92409	Sorghum	cytosol	63.18	58.74
HORVU2Hr1G040860.3	Barley	mitochondrion	25.78	57.83
Zm00001d029474_P001	Maize	cytosol	57.56	56.46
Zm00001d048624_P001	Maize	nucleus	20.35	47.73
PGSC0003DMT400036577	Potato	cytosol	11.05	43.85
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	32.95	38.03
VIT_09s0002g01190.t01	Wine grape	nucleus	37.6	35.6
Solyc03g123400.1.1	Tomato	extracellular, nucleus	37.21	35.42
AT3G13840.1	Thale cress	cytosol	34.69	35.1
PGSC0003DMT400089692	Potato	nucleus	36.24	34.5
KRH47610	Soybean	cytosol	35.85	34.13
CDX97537	Canola	cytosol	33.14	33.6
Bra027378.1-P	Field mustard	cytosol	33.14	33.53
KRH06192	Soybean	nucleus	35.27	33.52
TraesCS1D01G319500.1	Wheat	cytosol	21.12	26.27
TraesCS2D01G193300.1	Wheat	plastid	23.06	25.93
TraesCS2D01G194800.1	Wheat	cytosol, plastid	17.83	24.08

Protein Annotations

EnsemblPlants:TraesCS2D01G460500.1	EnsemblPlantsGene:TraesCS2D01G460500	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0042446	GO:GO:2000032	InterPro:IPR005202	InterPro:SCL29/NSP1	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12
MapMan:26.9.1.6.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:566998266..566999816

Molecular Weight (calculated)

54496.5 Da

IEP (calculated)

7.389

GRAVY (calculated)

-0.149

Length

516 amino acids

Sequence
(BLAST)

001: MNYHEQEDQG LAVVATNNDG LDWLEDSVSL LAGDIDLGGS YGWWCDILPA QKDDIGSVVA QTLSPPAPPA TSSPLAHPSP SIASPAASEP SPKKRKSPAR
101: VVSGSGHSSS NNQRRRTEQD RPGGGKKGGG AGSDRDARWA EQLLGPCAVA VEARNLSRVQ HLFYVLGELA AFSGDANHRL AAYGLRALSL RLPAAVGPAA
201: AAAVRVPAAC ESPTPSFAGA EPRLFRASLI KFHEVSPWFT LPNTLANAAI SQLASAAPRP LHLVDIGVSH GVQWPTLLES LTRMAAGRAP PSVRLTVVAT
301: PPVPFSASPP GYDFAPHLLR YAKSIKLDLE IGRAASLDPA HGLCTTPDEA LVVCLQFRLG HVSAEERADI IRRVKDLKPH LVVLSELDVG GNGSAAGEFT
401: ARLELLWRFL ESTHAAFKGR DGEDRRLLEA EAGTAVAVAA AREAMGREGW RDRMAAAGFD QVAFGGEAVE SARSLLRKYD NGWEMSTAAA ATGGGGAVAL
501: RWKGQPVSFC SLWRPA

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.