Factsheet for HORVU7Hr1G060780.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G104170.1	Barley	cytosol	25.57	86.62
HORVU2Hr1G104160.1	Barley	cytosol	42.62	77.95
TraesCS2A01G460200.1	Wheat	nucleus	71.93	67.05
HORVU5Hr1G117780.1	Barley	mitochondrion	58.63	66.2
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	51.77	66.05
TraesCS2D01G460500.1	Wheat	nucleus	69.85	65.12
TraesCS2B01G481900.1	Wheat	nucleus	69.85	64.74
HORVU2Hr1G040860.3	Barley	mitochondrion	29.31	61.3
HORVU7Hr1G115720.3	Barley	mitochondrion	52.39	55.88
Os03t0408600-01	Rice	nucleus	55.93	51.43
Zm00001d047266_P001	Maize	nucleus	54.68	49.16
Zm00001d029474_P001	Maize	cytosol	53.22	48.67
OQU92409	Sorghum	cytosol	55.3	47.93
PGSC0003DMT400036577	Potato	cytosol	10.6	39.23
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	31.81	34.23
Zm00001d048624_P001	Maize	nucleus	14.97	32.73
KRH47610	Soybean	cytosol	35.76	31.73
Solyc03g123400.1.1	Tomato	extracellular, nucleus	35.55	31.55
KRH06192	Soybean	nucleus	35.55	31.49
VIT_09s0002g01190.t01	Wine grape	nucleus	35.55	31.38
PGSC0003DMT400089692	Potato	nucleus	35.14	31.18
AT3G13840.1	Thale cress	cytosol	32.64	30.78
CDX97537	Canola	cytosol	31.18	29.47
Bra027378.1-P	Field mustard	cytosol	30.98	29.22
HORVU1Hr1G066390.1	Barley	cytosol	20.37	23.61
HORVU2Hr1G035120.1	Barley	cytosol	21.83	22.93
HORVU2Hr1G035730.4	Barley	cytosol, plastid	21.0	16.95

Protein Annotations

EnsemblPlants:HORVU7Hr1G060780.1	EnsemblPlantsGene:HORVU7Hr1G060780	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:SCL29/NSP1	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000B46CBFE
UniProt:A0A287WP24	MapMan:15.5.12	MapMan:26.9.1.6.1	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:281712302..281713899

Molecular Weight (calculated)

50038.0 Da

IEP (calculated)

10.922

GRAVY (calculated)

-0.199

Length

481 amino acids

Sequence
(BLAST)

001: XXXXXXXXXT AVEPHRPHTI AEPHRPAAQP NPIAPPLALA HAHPSPSIAS PAASEPSPGK RKSPVRVGSG SGQGSSNQRR RTEQDRPGGG KKGGRAGSDR
101: DARWAEQLLG PCAVAFEARN LSRVQHLFYV LGELAAFSRH PKHRLAAYGL RALSLRLPTA VGPAAAAAVR VPAACECPTP SIAGAEPRLF RASLVKFHEV
201: SPWFTLLNTL ANAAISQLAS AAPRPLHLVD IGVSHGVQLP TLLESLTCMA AGRAPPSVRL TVVATPPVPF SASPPGYDFS SHLLRYAKSI KLDLEIGRAT
301: SLDSAHGFYT APNKARVVCL QFRLGHVTAE ERMDIIRRVK DLKPQRVVLS GLDVGGNGSV AGESTARLEL LWRFLESTHE AFKGRDGKDR RLLEXXAGTA
401: VAVAAAREAT GRKGWRDRMT AAGFDQVVFG GEVVESARSL LRKYDNGWEM STVAAAKGGG GAVALRWKGQ PVSFCSLWRP A

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.