Factsheet for HORVU5Hr1G117780.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G104160.1	Barley	cytosol	49.3	79.85
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	68.78	77.72
HORVU2Hr1G104170.1	Barley	cytosol	24.18	72.54
TraesCS2B01G481900.1	Wheat	nucleus	76.76	63.01
TraesCS2A01G460200.1	Wheat	nucleus	76.29	62.98
TraesCS2D01G460500.1	Wheat	nucleus	76.29	62.98
HORVU7Hr1G060780.1	Barley	cytosol, plastid	66.2	58.63
HORVU2Hr1G040860.3	Barley	mitochondrion	30.52	56.52
HORVU7Hr1G115720.3	Barley	mitochondrion	57.98	54.77
Zm00001d029474_P001	Maize	cytosol	62.21	50.38
Os03t0408600-01	Rice	nucleus	61.27	49.9
OQU92409	Sorghum	cytosol	61.27	47.03
Zm00001d047266_P001	Maize	nucleus	57.51	45.79
PGSC0003DMT400036577	Potato	cytosol	10.09	33.08
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	33.57	31.99
VIT_09s0002g01190.t01	Wine grape	nucleus	40.38	31.56
AT3G13840.1	Thale cress	cytosol	36.38	30.39
Solyc03g123400.1.1	Tomato	extracellular, nucleus	38.5	30.26
KRH47610	Soybean	cytosol	38.26	30.07
PGSC0003DMT400089692	Potato	nucleus	38.03	29.89
Zm00001d048624_P001	Maize	nucleus	15.26	29.55
KRH06192	Soybean	nucleus	37.09	29.1
CDX97537	Canola	cytosol	34.27	28.68
Bra027378.1-P	Field mustard	cytosol	34.27	28.63
HORVU1Hr1G066390.1	Barley	cytosol	23.0	23.61
HORVU2Hr1G035120.1	Barley	cytosol	24.41	22.71
HORVU2Hr1G035730.4	Barley	cytosol, plastid	23.0	16.44

Protein Annotations

EnsemblPlants:HORVU5Hr1G117780.1	EnsemblPlantsGene:HORVU5Hr1G117780	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:SCL29/NSP1	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000B47F1DE
UniProt:A0A287SW85	MapMan:15.5.12	MapMan:26.9.1.6.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:651247726..651250036

Molecular Weight (calculated)

46000.1 Da

IEP (calculated)

10.733

GRAVY (calculated)

-0.187

Length

426 amino acids

Sequence
(BLAST)

001: LRRRLRVQLP LPVRLALSGS GHGSSNQRRR IEQDRPGGGA GSDRDARWAE QLPGPCAVAV EARNLSRVQH LFYVLGELAA FSGDANHRLA AYGLRALSLR
101: LPAAVGPAAA AAVRVPAACE CLTPSFAGAE PRLFRASLIK FHEVSSWFML PNTLANAAIS QLASPALHLI DIGVSHGVRW PTLLESLTRM AAGRAPPSVR
201: LTVVATPPVP FSASPPGYDF SPHLLRYAKS IKLDLEIGRA ASLDSAHGFC TAPDEALVVC LQFLLGHVTA EERTDIIRRV KDLKPQLVVL SELDVGGNGS
301: AAGEFTARLE LLWQFLESTH ATFKGRDGKD RRFLEAEAGT AVAVAAAREA VGREGWRDRM TATGFEQVAF GGEAVESARS LLRKYDNGWE SPRRRRRREA
401: AAPWRCGGKG SRCPSARCGR RRSSGS

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.