Factsheet for PGSC0003DMT400036577

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G104170.1	Barley	cytosol	40.77	37.32
PGSC0003DMT400089692	Potato	nucleus	76.15	18.27
VIT_09s0002g01190.t01	Wine grape	nucleus	74.62	17.8
KRH06192	Soybean	nucleus	67.69	16.21
KRH47610	Soybean	cytosol	65.38	15.68
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	51.54	14.99
CDX97537	Canola	cytosol	53.85	13.75
Bra027378.1-P	Field mustard	cytosol	53.85	13.73
AT3G13840.1	Thale cress	cytosol	53.85	13.73
HORVU7Hr1G115720.3	Barley	mitochondrion	40.77	11.75
TraesCS2A01G460200.1	Wheat	nucleus	43.85	11.05
TraesCS2D01G460500.1	Wheat	nucleus	43.85	11.05
Zm00001d047266_P001	Maize	nucleus	45.38	11.03
TraesCS2B01G481900.1	Wheat	nucleus	43.85	10.98
Os03t0408600-01	Rice	nucleus	43.85	10.9
Zm00001d029474_P001	Maize	cytosol	43.85	10.84
OQU92409	Sorghum	cytosol	45.38	10.63
HORVU7Hr1G060780.1	Barley	cytosol, plastid	39.23	10.6
EER97527	Sorghum	nucleus	43.08	10.18
HORVU5Hr1G117780.1	Barley	mitochondrion	33.08	10.09
Zm00001d022116_P001	Maize	nucleus	41.54	9.91
PGSC0003DMT400055239	Potato	nucleus	30.77	8.79
PGSC0003DMT400067360	Potato	cytosol	28.46	8.67
PGSC0003DMT400037884	Potato	cytosol	26.15	8.11
PGSC0003DMT400064187	Potato	plastid	26.92	7.99
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	16.92	5.84
Zm00001d048624_P001	Maize	nucleus	3.08	1.82
HORVU2Hr1G040860.3	Barley	mitochondrion	3.08	1.74
HORVU2Hr1G104160.1	Barley	cytosol	2.31	1.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400036577	EnsemblPlantsGene:PGSC0003DMG400014099	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:SCL29/NSP1	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400014099	UniParc:UPI00029628C1
UniProt:M1B3V2	MapMan:15.5.12	:	:	:	:

Description

Nodulation signaling pathway 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014099]

Coordinates

chr12:+:52626283..52626845

Molecular Weight (calculated)

15227.1 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.727

Length

130 amino acids

Sequence
(BLAST)

001: MDCSCNSCGD FTTRFSRRVE YLWKFLDSTS VAYKGRESDG RRMMEGEAAK ALTNMGEMNE TKEKWCERMR TVGFVWKMFG DDAIDRARAL LKKYDNNWEM
101: RVDEKDGCVG LWWKGDPVSF CSLWKIDPNT

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.