Factsheet for Zm00001d022116_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97527	Sorghum	nucleus	58.9	58.36
Zm00001d029474_P001	Maize	cytosol	50.83	52.66
Zm00001d047266_P001	Maize	nucleus	49.72	50.65
PGSC0003DMT400036577	Potato	cytosol	9.91	41.54
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	32.29	39.37
PGSC0003DMT400089692	Potato	nucleus	34.31	34.5
VIT_09s0002g01190.t01	Wine grape	nucleus	34.13	34.13
Solyc03g123400.1.1	Tomato	extracellular, nucleus	33.76	33.95
AT3G13840.1	Thale cress	cytosol	31.56	33.73
CDX97537	Canola	cytosol	31.19	33.4
KRH06192	Soybean	nucleus	33.03	33.15
Bra027378.1-P	Field mustard	cytosol	31.01	33.14
KRH47610	Soybean	cytosol	32.29	32.47
Zm00001d048624_P001	Maize	nucleus	13.03	32.27
Zm00001d021998_P001	Maize	plastid	20.18	24.12
Zm00001d006744_P001	Maize	plastid	20.0	23.9
Zm00001d038609_P001	Maize	cytosol	18.17	23.24
Zm00001d006721_P001	Maize	nucleus	20.18	18.77
Zm00001d029607_P001	Maize	plastid	21.1	18.25
Zm00001d021973_P001	Maize	nucleus	19.63	18.07

Protein Annotations

EntrezGene:103634387	MapMan:15.5.12	MapMan:26.9.1.6.1	UniProt:A0A1D6IJF0	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
ProteinID:ONM59570.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1
InterPro:TF_GRAS	UniParc:UPI000220B800	EnsemblPlantsGene:Zm00001d022116	EnsemblPlants:Zm00001d022116_P001	EnsemblPlants:Zm00001d022116_T001	SEG:seg

Description

GRAS-transcription factor 81Scarecrow-like protein 29

Coordinates

chr7:+:170723712..170725349

Molecular Weight (calculated)

57962.6 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.229

Length

545 amino acids

Sequence
(BLAST)

001: MNNERESQEP AAATTSDWLD ESIAFLAANL DLGFNDYGWP SASEAQERHD DVRSMIVETL APTATTLHQP SLNLDISVAS SSSPMTSQQE FGQPKKRKSS
101: GNSSSQRPHV GGGGQQEKGG ASCARPKPGK KGSGKGAAAT VDREARWAEQ LLNPCAAAIE AGNLPRTQHL LYVLGELASF SGDPNHRLAA HGLRALTRRL
201: PHATGQAALA TVKVPPCECP TSVFSGVDPR LFRASLIRFN EVSPWFAVPN ALANSAIAQA ASRKKGAVAE PRQVHVVDIG VSHGVQWPTL LEALTRVPRG
301: STPPSVRLTL VGPTATPPVP FSASPPGYDC SPQLLRYAKS IDLDLAIVHA PCLDTLRGTL TPGETLVVCL QFRLGLTTAD DQAAIFRKVR DLNPELMVLT
401: ELDGGRRNDD SATSEFAARL ELLWRFLDST AAAFKGMDAY ERRVMEAEAG TALALTPRCG ATVDGGREAW RARLAAAGFE EAAFGGEAVE TAKALLRKYD
501: GGWELVPPSP SAAAAVGLRW EGQPVSFSSM WRPAQASPVL IGPCT

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.