Factsheet for Zm00001d021998_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97471	Sorghum	cytosol	92.32	92.53
Zm00001d006744_P001	Maize	plastid	86.18	86.18
TraesCS2D01G193300.1	Wheat	plastid	84.21	83.66
TraesCS2A01G194600.1	Wheat	plastid	83.77	83.22
Os07t0589200-00	Rice	cytosol	85.96	82.88
HORVU2Hr1G035120.1	Barley	cytosol	83.11	82.75
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	82.68	74.65
GSMUA_Achr10P...	Banana	plastid	65.35	65.49
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	65.57	65.43
GSMUA_Achr6P07790_001	Banana	plastid	63.6	63.46
Solyc02g092570.1.1	Tomato	plastid	56.8	59.13
VIT_07s0129g00340.t01	Wine grape	plastid	58.99	59.12
PGSC0003DMT400064187	Potato	plastid	55.92	58.22
AT3G49950.1	Thale cress	mitochondrion	50.66	56.34
CDY12844	Canola	cytosol, mitochondrion, plastid	50.44	53.12
CDY58198	Canola	mitochondrion	48.68	53.11
KRH04459	Soybean	plastid	55.92	52.9
CDY30617	Canola	mitochondrion	48.46	52.87
Bra036041.1-P	Field mustard	mitochondrion	48.25	52.63
AT5G67411.1	Thale cress	cytosol, mitochondrion, nucleus	22.59	50.99
KRH58050	Soybean	cytosol	56.36	48.95
Zm00001d038609_P001	Maize	cytosol	40.57	43.43
Zm00001d047266_P001	Maize	nucleus	27.63	23.55
Zm00001d029474_P001	Maize	cytosol	26.75	23.19
Zm00001d006721_P001	Maize	nucleus	29.39	22.87
Zm00001d021973_P001	Maize	nucleus	29.39	22.64
Zm00001d029607_P001	Maize	plastid	28.73	20.79
Zm00001d022116_P001	Maize	nucleus	24.12	20.18
Zm00001d048624_P001	Maize	nucleus	9.43	19.55

Protein Annotations

EntrezGene:100281784	MapMan:15.5.12	EMBL:BT067693	UniProt:C0PHC4	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
EMBL:KJ727941	ProteinID:ONM59234.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF51
InterPro:TF_GRAS	UniParc:UPI000195CFCA	EnsemblPlantsGene:Zm00001d021998	EnsemblPlants:Zm00001d021998_P001	EnsemblPlants:Zm00001d021998_T001	SEG:seg

Description

GRAS-transcription factor 11Scarecrow-like protein 32

Coordinates

chr7:+:167723761..167725131

Molecular Weight (calculated)

49481.2 Da

IEP (calculated)

5.398

GRAVY (calculated)

0.011

Length

456 amino acids

Sequence
(BLAST)

001: MMQFTHTAPP PPPLHPNGHA GGLGLGLFLD VGAPRAARPW PGSFPTPASK ISLGNLNSTS CMEQLLVHCA NAIEANDATL TQQILWVLNN IAPPDGDSNQ
101: RLTAAFLCAL VARASRTGAC KAVTAAVAAA VESAALHVHR FTAVELASFV DLTPWHRFGY TAANAAILEA VEGFPAVHVV ELGTTHCMQI PTLIDMLASR
201: PEGPPILRLT VADVAPCAPP PALDMSYEEL GAKLTNFARS RNMSMDFRVV PTTPADAFTS LVDQLRVQQL VMDGTEALVL NFHMLLHTVP DETAGSVSLT
301: HPVSLRTMLL KSLRTLDPNL VVVVEEDADF TADDVVGRLR AAFNFLWIPY DAVDTFLPKG SEQRRWYEAE IGWKVENVLA QEGVDRVERQ EDRGRWGQRM
401: RSAGFRAVSF GEEAAGEVKA MLNEHAAGWG MKREDDDLVL TWKGHNVVFA SAWAPS

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.