Factsheet for TraesCS2B01G212300.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

mitochondrion 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 3
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G193300.1	Wheat	plastid	85.94	94.55
TraesCS2A01G194600.1	Wheat	plastid	85.54	94.12
HORVU2Hr1G035120.1	Barley	cytosol	80.79	89.08
EER97471	Sorghum	cytosol	75.45	83.74
Zm00001d021998_P001	Maize	plastid	74.65	82.68
Zm00001d006744_P001	Maize	plastid	72.67	80.48
Os07t0589200-00	Rice	cytosol	74.65	79.7
GSMUA_Achr10P...	Banana	plastid	58.42	64.84
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	57.43	63.46
GSMUA_Achr6P07790_001	Banana	plastid	55.45	61.27
Solyc02g092570.1.1	Tomato	plastid	49.51	57.08
VIT_07s0129g00340.t01	Wine grape	plastid	51.09	56.7
PGSC0003DMT400064187	Potato	plastid	49.11	56.62
AT3G49950.1	Thale cress	mitochondrion	44.55	54.88
CDY12844	Canola	cytosol, mitochondrion, plastid	45.94	53.58
KRH04459	Soybean	plastid	50.1	52.49
AT5G67411.1	Thale cress	cytosol, mitochondrion, nucleus	20.59	51.49
CDY30617	Canola	mitochondrion	42.57	51.44
CDY58198	Canola	mitochondrion	42.38	51.2
Bra036041.1-P	Field mustard	mitochondrion	42.38	51.2
KRH58050	Soybean	cytosol	51.49	49.52
TraesCS1B01G332000.1	Wheat	cytosol	36.24	44.1
TraesCS2B01G481900.1	Wheat	nucleus	23.96	23.31
TraesCS2B01G214600.1	Wheat	nucleus, plastid	26.93	22.86

Protein Annotations

EnsemblPlants:TraesCS2B01G212300.1	EnsemblPlantsGene:TraesCS2B01G212300	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF51
PFAM:PF03514	PFscan:PS50985	SEG:seg	SignalP:SignalP-noTM	MapMan:15.5.12	:

Description

No Description!

Coordinates

chr2B:-:196192778..196194295

Molecular Weight (calculated)

54573.6 Da

IEP (calculated)

5.983

GRAVY (calculated)

0.103

Length

505 amino acids

Sequence
(BLAST)

001: MPCTSTKSAP QTAGRVLALP LCSFLIIAAA SQICCLPFHP PRDPPYMMQF THAAVTAPPL YPNGHHGLGL GLFLDVGAPR ARPWPAAGSL FPTLPPSSKI
101: SLGNLNSAGC MEQLLVHCAN AIEANDATLT QQILWVLNNI APADGDSNQR LTAAFLCALV ARASRTGACK AVTAAVAAAV ESAALHVHRF TAVELASFVD
201: LTPWHRFGYM AANHAILEAV EGFSVVHVVD LSTTHCMQIP TLIDMLASRA EGPPILRLTV ADVGCSGPPP ALDMSYDELG AKLVNFARSR NVTMDFRMVP
301: TSPADAFTSL VDQLRVQQLV SDGTEALILN CHMLLHTVPD ETAGSVSLTQ SVSLRTMLLK SIRTLDPTLV VVAEEDADFT AGDVVGRLRA AFNFLWIPYD
401: AVDTFLPKGS EQRRWYEAEV GWKVENVLAQ EGVDRVERQE DRARWGQRMR GAGFRAVAFG EEAAGEIRTM LNEHAAGWGM KREDDDLMLT WKGHNVVFAS
501: AWAPS

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.