Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G319500.1 | Wheat | cytosol | 98.07 | 98.07 |
| TraesCS1A01G319700.1 | Wheat | cytosol | 97.83 | 97.83 |
| HORVU1Hr1G066390.1 | Barley | cytosol | 94.7 | 94.7 |
| EES18455 | Sorghum | cytosol | 76.63 | 75.0 |
| Os05t0500600-01 | Rice | cytosol | 74.7 | 72.94 |
| Zm00001d038609_P001 | Maize | cytosol | 73.98 | 72.07 |
| KXG33889 | Sorghum | cytosol | 51.33 | 66.36 |
| GSMUA_Achr6P24300_001 | Banana | cytosol, peroxisome, plastid | 56.14 | 55.21 |
| VIT_12s0059g02770.t01 | Wine grape | cytosol | 52.53 | 48.99 |
| Solyc07g052960.1.1 | Tomato | cytosol | 49.4 | 47.79 |
| PGSC0003DMT400067360 | Potato | cytosol | 49.16 | 47.78 |
| KRH26849 | Soybean | cytosol | 50.6 | 45.65 |
| KRH22503 | Soybean | cytosol | 50.12 | 44.54 |
| TraesCS2B01G212300.1 | Wheat | endoplasmic reticulum, plasma membrane | 44.1 | 36.24 |
| TraesCS2B01G214600.1 | Wheat | nucleus, plastid | 33.01 | 23.03 |
| TraesCS2B01G481900.1 | Wheat | nucleus | 25.3 | 20.23 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G332000.1 | EnsemblPlantsGene:TraesCS1B01G332000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF5 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr1B:+:558087556..558088803
Molecular Weight (calculated)
44481.0 Da
IEP (calculated)
6.666
GRAVY (calculated)
-0.124
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQELRGGGA VRAQSTLCFS GALVDGPRIQ QLLLHCAAAL ESNDVTLAQQ AMWVLNNIAS AQGDPNQRLT SSLLRGLVAR ACRTCGSPRA DSMGPPPALG
101: SQRAMSVTEL ADYVDLTPWH RFGFTASNGA ILRAVAGRDA VHVVDLGVTR CMQWPTLIDA LSKRPGGPPA LRITVPSVRP AGPPLLGVPD EEIGLRLANF
201: AKSKGVHLEF NVVNKSTATS SPSPTKLQTL CQELACVLSD QSALRLRDGE ALVVNCQSWL RHVAPGSRDG FVDAVRALDP CLVTVTDEDA DLDSPSLATR
301: IAGCFNFHWI LFDALDTSAP RDSPRRLEHE AAVGQKIESV VGADGTERSE SGARLAERMR RKGFAGAGFG QDEVAEVRHL LSEHATGWGV KREEDMLVFT
401: WKGHAAVFTT AWAPN
101: SQRAMSVTEL ADYVDLTPWH RFGFTASNGA ILRAVAGRDA VHVVDLGVTR CMQWPTLIDA LSKRPGGPPA LRITVPSVRP AGPPLLGVPD EEIGLRLANF
201: AKSKGVHLEF NVVNKSTATS SPSPTKLQTL CQELACVLSD QSALRLRDGE ALVVNCQSWL RHVAPGSRDG FVDAVRALDP CLVTVTDEDA DLDSPSLATR
301: IAGCFNFHWI LFDALDTSAP RDSPRRLEHE AAVGQKIESV VGADGTERSE SGARLAERMR RKGFAGAGFG QDEVAEVRHL LSEHATGWGV KREEDMLVFT
401: WKGHAAVFTT AWAPN
001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI
Arabidopsis Description
SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.