CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038609_P001	Maize	cytosol	87.74	87.32
TraesCS1D01G319500.1	Wheat	cytosol	75.71	77.35
TraesCS1A01G319700.1	Wheat	cytosol	75.24	76.87
TraesCS1B01G332000.1	Wheat	cytosol	75.0	76.63
HORVU1Hr1G066390.1	Barley	cytosol	74.76	76.39
KXG33889	Sorghum	cytosol	57.55	76.01
Os05t0500600-01	Rice	cytosol	73.58	73.41
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	55.66	55.92
VIT_12s0059g02770.t01	Wine grape	cytosol	52.12	49.66
PGSC0003DMT400067360	Potato	cytosol	50.0	49.65
Solyc07g052960.1.1	Tomato	cytosol	48.82	48.25
KRH26849	Soybean	cytosol	49.06	45.22
KRH22503	Soybean	cytosol	48.82	44.33
EER97471	Sorghum	cytosol	43.87	40.88
OQU90176	Sorghum	nucleus, plastid	34.43	24.41
EER94653	Sorghum	plastid	34.67	22.14
OQU92409	Sorghum	cytosol	25.47	19.46
EER97527	Sorghum	nucleus	23.58	18.18

Protein Annotations

MapMan:15.5.12	EntrezGene:8080069	UniProt:C5Z0F5	EnsemblPlants:EES18455	ProteinID:EES18455	ProteinID:EES18455.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF5	EnsemblPlantsGene:SORBI_3009G187500	InterPro:TF_GRAS
UniParc:UPI0001A88AD8	RefSeq:XP_002440025.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:53991054..53992328

Molecular Weight (calculated)

45341.8 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.103

Length

424 amino acids

Sequence
(BLAST)

001: MEQELRTGGG GNLRAAHSSV CFSGALIDGP RIQQLLLHCA AALESNDVTL AQQAMWVLNN IASSQGDPSQ RLTSWLLRAL VARACRLCGP AGTIQAAAAA
101: GAPAPRERAM SVTELAEYID LTPWHRFGFT ASNGTILRAV AGSAAVHVVD LSVTRCMQWP TLIDMLSKRP GGPPALRITV PSARPAVPPQ LGVSDEEIGL
201: RLANFAKSKG VQLEFSVVQC ASPSPTSSPP KKQAALCQDL ASVLSNRQSL ELRDGEALVV NCQSWIRHVA PGSRDAFLDA VRALNPCLVT VTDEDADLDS
301: PSLATRIAGC FDFHWILFDA LDTSAPRDSP RRVEHEAAVG RKIESVVGAD DADGAERAES GARLAERMRR NGFASVGFDE EAAAEVRRLL SEHATGWGVK
401: REEDMLVLTW KGHGAVYTSA WTPN

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.