CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18455	Sorghum	cytosol	76.01	57.55
Zm00001d038609_P001	Maize	cytosol	71.96	54.23
HORVU1Hr1G066390.1	Barley	cytosol	66.98	51.81
TraesCS1D01G319500.1	Wheat	cytosol	66.98	51.81
TraesCS1A01G319700.1	Wheat	cytosol	66.67	51.57
TraesCS1B01G332000.1	Wheat	cytosol	66.36	51.33
Os05t0500600-01	Rice	cytosol	67.29	50.82
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	47.04	35.78
VIT_12s0059g02770.t01	Wine grape	cytosol	45.79	33.03
PGSC0003DMT400067360	Potato	cytosol	43.93	33.02
Solyc07g052960.1.1	Tomato	cytosol	43.61	32.63
KRH26849	Soybean	cytosol	42.68	29.78
KRH22503	Soybean	cytosol	42.68	29.34
EER97471	Sorghum	cytosol	38.32	27.03
OQU90176	Sorghum	nucleus, plastid	29.28	15.72
EER94653	Sorghum	plastid	29.59	14.31
OQU92409	Sorghum	cytosol	19.94	11.53
EER97527	Sorghum	nucleus	19.63	11.45

Protein Annotations

EnsemblPlants:KXG33889	EnsemblPlantsGene:SORBI_3003G386900	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF5	PFAM:PF03514	PFscan:PS50985	ProteinID:KXG33889	ProteinID:KXG33889.1	SEG:seg
UniParc:UPI00081ACC6F	UniProt:A0A1B6Q7J0	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:69885906..69886956

Molecular Weight (calculated)

35067.3 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.284

Length

321 amino acids

Sequence
(BLAST)

001: MEQELRTDGG GNLRAAHNSV CFSGTLIDGP LAAPPLRRGA RSNDVTLAQQ AMWVLNNIAS SQGDPSQRLT SWLLRALVAR ACRLCGPTGT IQAAAGAPAP
101: RERAMSVTEL AEYIDLTQWH RFCFTASNST ILRAVAGSAV HIIDLRSWIR HVAPGFRDTF LDIVRTLNPC LVTVTGEDAD LDSPSLATRI AGCFDFHWIL
201: FDALDTAAPR DSPWRVEHEA AVGRKIESVV GDDDADGAER VESGARLAEQ MRRNGFASVG LDEDAAAEVR RLLSEHATGW GVKREEDMLV LTWKGHDASV
301: ENRRHAGRHV PNTTHQNSHR V

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.