CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021998_P001	Maize	plastid	92.53	92.32
Zm00001d006744_P001	Maize	plastid	89.89	89.69
Os07t0589200-00	Rice	cytosol	89.01	85.62
TraesCS2D01G193300.1	Wheat	plastid	85.49	84.75
TraesCS2A01G194600.1	Wheat	plastid	85.49	84.75
HORVU2Hr1G035120.1	Barley	cytosol	84.62	84.06
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	83.74	75.45
GSMUA_Achr10P...	Banana	plastid	65.93	65.93
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	65.49	65.21
GSMUA_Achr6P07790_001	Banana	plastid	62.86	62.58
Solyc02g092570.1.1	Tomato	plastid	56.92	59.13
VIT_07s0129g00340.t01	Wine grape	plastid	59.12	59.12
PGSC0003DMT400064187	Potato	plastid	56.26	58.45
AT3G49950.1	Thale cress	mitochondrion	51.21	56.83
CDY12844	Canola	cytosol, mitochondrion, plastid	52.09	54.73
AT5G67411.1	Thale cress	cytosol, mitochondrion, nucleus	23.96	53.96
KRH04459	Soybean	plastid	57.14	53.94
CDY58198	Canola	mitochondrion	49.01	53.35
CDY30617	Canola	mitochondrion	49.01	53.35
Bra036041.1-P	Field mustard	mitochondrion	48.79	53.11
KRH58050	Soybean	cytosol	57.36	49.71
EES18455	Sorghum	cytosol	40.88	43.87
KXG33889	Sorghum	cytosol	27.03	38.32
OQU90176	Sorghum	nucleus, plastid	31.43	23.91
OQU92409	Sorghum	cytosol	28.35	23.24
EER97527	Sorghum	nucleus	24.62	20.36
EER94653	Sorghum	plastid	29.67	20.33

Protein Annotations

MapMan:15.5.12	EntrezGene:8078983	UniProt:C5XD47	EnsemblPlants:EER97471	ProteinID:EER97471	ProteinID:EER97471.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF51	EnsemblPlantsGene:SORBI_3002G359800	InterPro:TF_GRAS
UniParc:UPI0001A83831	RefSeq:XP_002460950.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:72217233..72218600

Molecular Weight (calculated)

49065.7 Da

IEP (calculated)

5.270

GRAVY (calculated)

0.055

Length

455 amino acids

Sequence
(BLAST)

001: MMQFTHTAPP PPPHAAGGLG LGLFLDVGAP RAARGPWPGS FPTPASKISL GNLNSTSCME QLLVHCANAI EANDATLTQQ ILWVLNNIAP PDGDSNQRLT
101: AAFLCALVAR ASRTGACKAV TAAVAAAVES AALHVHRFTA VELASFVDLT PWHRFGYTAA NAAILEAVEG FPVVHVVELG TTHCMQIPTL IDMLASRAEG
201: PPILRLTVAD VAPSAPPPAL DMSYEELGAK LVNFARSRNM SMDFRVVPTS PADALTSLVD QLRVQQLVLD GTEALVVNCH MLLHTVPDET AGSVSLTQPV
301: SLRTMLLKSL RTLDPNLVVV VEEDADFTAG DVVGRLRAAF NFLWIPYDAV DTFLPKGSEQ RRWYEAEIGW KVENVLAQEG VERVERQEDR GRWGQRMRSA
401: GFRAVAFGEE AAGEVKAMLN EHAAGWGMKR EDDDLVLTWK GHNVVFASAW APSPS

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.