Factsheet for PGSC0003DMT400064187

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092570.1.1	Tomato	plastid	95.89	95.89
VIT_07s0129g00340.t01	Wine grape	plastid	78.31	75.38
AT5G67411.1	Thale cress	cytosol, mitochondrion, nucleus	28.31	61.39
GSMUA_Achr10P...	Banana	plastid	63.7	61.32
GSMUA_Achr6P07790_001	Banana	plastid	63.47	60.83
KRH04459	Soybean	plastid	66.89	60.79
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	61.64	59.08
AT3G49950.1	Thale cress	mitochondrion	54.79	58.54
CDY12844	Canola	cytosol, mitochondrion, plastid	57.31	57.97
KRH58050	Soybean	cytosol	67.81	56.57
EER97471	Sorghum	cytosol	58.45	56.26
Bra036041.1-P	Field mustard	mitochondrion	53.42	55.98
Zm00001d021998_P001	Maize	plastid	58.22	55.92
CDY58198	Canola	mitochondrion	53.2	55.74
CDY30617	Canola	mitochondrion	53.2	55.74
Zm00001d006744_P001	Maize	plastid	57.53	55.26
HORVU2Hr1G035120.1	Barley	cytosol	57.31	54.8
TraesCS2D01G193300.1	Wheat	plastid	57.31	54.68
Os07t0589200-00	Rice	cytosol	58.9	54.55
TraesCS2A01G194600.1	Wheat	plastid	56.85	54.25
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	56.62	49.11
PGSC0003DMT400067360	Potato	cytosol	46.58	47.78
PGSC0003DMT400037884	Potato	cytosol	27.4	28.64
PGSC0003DMT400036577	Potato	cytosol	7.99	26.92
PGSC0003DMT400055239	Potato	nucleus	26.71	25.71
PGSC0003DMT400089692	Potato	nucleus	23.74	19.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400064187	EnsemblPlantsGene:PGSC0003DMG400024937	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF51	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400024937	SEG:seg	UniParc:UPI000295DB01
UniProt:M1CBW0	MapMan:15.5.12	:	:	:	:

Description

SCL domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024937]

Coordinates

chr2:+:43034215..43036069

Molecular Weight (calculated)

49389.1 Da

IEP (calculated)

5.585

GRAVY (calculated)

-0.139

Length

438 amino acids

Sequence
(BLAST)

001: MQFTESLPPQ VSSFSSLMMN KNSNTNNNQI QHARPWPGFH TSKNLGNIGD TNCMEQLLVH CANAIDSNDA TLAQQILWVL NNIAPPDGDS NQRLTCGFLR
101: ALILRAAKIG TCKLLTSNLN HSMETHKFSI IELASFVDLT PWHRFGFTAA NGAILEAVEG YSIIHIVDFS LTHCMQIPTL IDAISTRVEG PPLIKLTVAG
201: ATEDLPPMLD LSYEELGAKL VNFARSRNVM MEFRVIPSSS SDGFSNVFEQ LRVQNLIRPD NGEALVINCH MMLHYIPEET TVLSNSFRAM FLKAIRNLDP
301: TIVVLVDEDA DFTSNNLVCR LRSAFNYLWI PYDTVDTFLP RGSKQRQWYE ADICWKIENV IAQEGIQRLE RLEPKSQWVQ RMRNANFRSS GFSEEGVTEV
401: KNMLDEHAAG WGLKRDEEDL VLTWKGHSVV FATAWVPL

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.