CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G67411.1	Thale cress	cytosol, mitochondrion, nucleus	38.11	81.68
CDY30617	Canola	mitochondrion	60.51	62.68
CDY58198	Canola	mitochondrion	58.66	60.77
Solyc02g092570.1.1	Tomato	plastid	58.2	57.53
PGSC0003DMT400064187	Potato	plastid	57.97	57.31
VIT_07s0129g00340.t01	Wine grape	plastid	58.89	56.04
GSMUA_Achr10P...	Banana	plastid	55.43	52.75
EER97471	Sorghum	cytosol	54.73	52.09
GSMUA_Achr6P07790_001	Banana	plastid	54.97	52.08
KRH04459	Soybean	plastid	57.51	51.66
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	54.27	51.42
TraesCS2A01G194600.1	Wheat	plastid	54.5	51.42
TraesCS2D01G193300.1	Wheat	plastid	54.27	51.2
Zm00001d006744_P001	Maize	plastid	53.81	51.1
HORVU2Hr1G035120.1	Barley	cytosol	53.81	50.87
Zm00001d021998_P001	Maize	plastid	53.12	50.44
Os07t0589200-00	Rice	cytosol	54.27	49.68
KRH58050	Soybean	cytosol	57.04	47.05
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	53.58	45.94
CDY50264	Canola	nucleus, plastid	27.25	24.84
CDX72645	Canola	cytosol, plastid	27.71	22.56
CDY44032	Canola	cytosol, plastid	27.25	22.48
CDX97537	Canola	cytosol	24.94	21.22

Protein Annotations

EnsemblPlants:CDY12844	EnsemblPlantsGene:GSBRNA2T00070487001	GO:A0A078FIM7	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF51	PFAM:PF03514	PFscan:PS50985	ProteinID:CDY12844	ProteinID:CDY12844.1
SEG:seg	UniParc:UPI0004EBE497	UniProt:A0A078FIM7	MapMan:15.5.12	:	:

Description

BnaC07g15890DBnaC07g15890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIM7]

Coordinates

chrLK032027:-:611283..612929

Molecular Weight (calculated)

48325.7 Da

IEP (calculated)

4.971

GRAVY (calculated)

-0.024

Length

433 amino acids

Sequence
(BLAST)

001: MNKAMILNPT RPVWPGFSSS KSLCGDANCM EQLLLHCANA IESNDATLTQ QTIWVINNLA SSDGDSTQRL ASSLLRALIS RAATKSPAFS FLSVASASHE
101: TLHRFSVIEL AAFVDLTPWH RFGFIAANAA ILDAVKGYSS VHIVDLSLTH CMQIPTLIDS MATKLINKEQ PPPLLKLTVV LSESPPPPLL GISYEELGLK
201: LVSFAATRNV AMEFRIIYSS YSDGLSSLIE QLRLDPLVCN EALVVNCHMM LHYIPNDTLS YSSPSRSLFL KELRDLNPTM VTLIEEDADF TSSNFIARLR
301: SLFNYMWIPY DTADTFLTCG SEQRQWYEAD IGWKIDNVVA KEGAERVERL EPKSRWFERM READFTGVGF GEAVAREVQT MLEEHAAGWG MKRDVDDSDD
401: VERFVLTWKG HSVVFASAWV PMNRVDGCSH VEA

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.