CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30617	Canola	mitochondrion	96.17	96.17
AT3G49950.1	Thale cress	mitochondrion	79.43	80.98
CDY12844	Canola	cytosol, mitochondrion, plastid	60.77	58.66
PGSC0003DMT400064187	Potato	plastid	55.74	53.2
VIT_07s0129g00340.t01	Wine grape	plastid	57.89	53.19
Solyc02g092570.1.1	Tomato	plastid	54.55	52.05
GSMUA_Achr10P...	Banana	plastid	54.55	50.11
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	54.31	49.67
EER97471	Sorghum	cytosol	53.35	49.01
Zm00001d021998_P001	Maize	plastid	53.11	48.68
Zm00001d006744_P001	Maize	plastid	53.11	48.68
GSMUA_Achr6P07790_001	Banana	plastid	52.63	48.14
TraesCS2D01G193300.1	Wheat	plastid	51.91	47.28
HORVU2Hr1G035120.1	Barley	cytosol	51.67	47.16
KRH04459	Soybean	plastid	54.31	47.1
TraesCS2A01G194600.1	Wheat	plastid	51.44	46.84
Os07t0589200-00	Rice	cytosol	52.15	46.09
KRH58050	Soybean	cytosol	55.26	44.0
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	51.2	42.38
CDY50264	Canola	nucleus, plastid	27.99	24.63
CDX72645	Canola	cytosol, plastid	28.47	22.37
CDY44032	Canola	cytosol, plastid	27.99	22.29
CDX97537	Canola	cytosol	26.79	22.0

Protein Annotations

MapMan:15.5.12	GO:A0A078J369	UniProt:A0A078J369	EnsemblPlants:CDY58198	ProteinID:CDY58198	ProteinID:CDY58198.1
ncoils:Coil	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00023261001	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF51	InterPro:TF_GRAS	UniParc:UPI0004EF0726	SEG:seg	:

Description

BnaC08g48710DBnaC08g48710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J369]

Coordinates

chrLK033645:+:19976..21232

Molecular Weight (calculated)

46937.3 Da

IEP (calculated)

5.624

GRAVY (calculated)

-0.028

Length

418 amino acids

Sequence
(BLAST)

001: MTRTRIISPT RFPSLKSQRC GSGGDASFME QLLLHCATAI DSNDAALVHQ LLWVLNNIAS PDGDSSTQRL TSAFVRALLA RAVSKIPTLF STFGNTVFQP
101: PADEIHRFSV VELAGFIDLT PWHRFGFIAA NEAILTAVEG YAKVHIVDLS LTHCMQIPTL IDAIATKLNK PLLLKLTVVS SASNFPPFIN ISYEELGSKL
201: VNFATSRNIE MQFTIIPSTY SDGFSSLLQH LRMYPTSYNE ALVVNCHMML RYIPDETLTP SSPSSLSLRN VFLNQLRSLN PTMVTLIEED ADLTSDNLVT
301: RLSSAFNYFW IPFDTTDTFM SEQRRLYEAE ISWKIENVVA KEGVERVERT ETKGRWLERM RDNEFGGVRV REEAVSELKA MLGEHAVGWG MKKDDDDESL
401: VLTWKGHSVV FATVWVPI

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.