Factsheet for GSMUA_Achr6P16880_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plastid	81.18	81.54
GSMUA_Achr6P07790_001	Banana	plastid	77.9	77.9
Zm00001d021998_P001	Maize	plastid	65.43	65.57
EER97471	Sorghum	cytosol	65.21	65.49
TraesCS2A01G194600.1	Wheat	plastid	64.55	64.27
Os07t0589200-00	Rice	cytosol	66.3	64.06
TraesCS2D01G193300.1	Wheat	plastid	64.33	64.05
VIT_07s0129g00340.t01	Wine grape	plastid	63.68	63.96
Zm00001d006744_P001	Maize	plastid	63.68	63.82
HORVU2Hr1G035120.1	Barley	cytosol	63.02	62.88
Solyc02g092570.1.1	Tomato	plastid	59.52	62.1
PGSC0003DMT400064187	Potato	plastid	59.08	61.64
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	63.46	57.43
AT5G67411.1	Thale cress	cytosol, mitochondrion, nucleus	24.73	55.94
AT3G49950.1	Thale cress	mitochondrion	50.11	55.85
CDY30617	Canola	mitochondrion	49.89	54.55
CDY58198	Canola	mitochondrion	49.67	54.31
Bra036041.1-P	Field mustard	mitochondrion	49.67	54.31
CDY12844	Canola	cytosol, mitochondrion, plastid	51.42	54.27
KRH04459	Soybean	plastid	55.14	52.28
KRH58050	Soybean	cytosol	56.46	49.14
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	42.89	46.45
GSMUA_Achr6P21350_001	Banana	cytosol	28.23	32.17
GSMUA_Achr10P...	Banana	cytosol	26.91	30.6
GSMUA_Achr9P02380_001	Banana	cytosol	27.13	30.32
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	27.13	23.31
GSMUA_Achr8P30950_001	Banana	mitochondrion	26.91	23.21
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	21.23	21.7
GSMUA_Achr4P16460_001	Banana	nucleus	24.95	21.47

Protein Annotations

EnsemblPlants:GSMUA_Achr6P16880_001	EnsemblPlants:GSMUA_Achr6T16880_001	EnsemblPlantsGene:GSMUA_Achr6G16880_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF51	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI0002960F94
UniProt:M0T7N6	MapMan:15.5.12	:	:	:	:

Description

Scarecrow-like protein 32 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16880_001]

Coordinates

chr6:+:11270398..11271771

Molecular Weight (calculated)

50475.9 Da

IEP (calculated)

5.312

GRAVY (calculated)

0.043

Length

457 amino acids

Sequence
(BLAST)

001: MMQFTTSVPL LPPIGPDGLS LLLEEDDAPK PSLGGSWPWR GRLLASPKTL GSFNTASCME QLLIHFANAI ESNDATLAQQ ILWVLNNIAP PDGDCNQRLT
101: SAFLRALVAR ASRTGSCKIL TAVAARADAE LALHLHRFSA IDLANFIDLT PWHRFGYAAA NAAIAEAVEG LPLVHIVDLS TTHCMQMPTL IDLLANRPEG
201: PPFIRLTVSG LTTTAAPPIL NMTYDELGSR LVNFARSRNV AMEFVVIPTD PSDAFVSLIE QLRVQQLVSE GEALIVNCQM LLHYIPEETV GVIASTTNVS
301: PPMLSLRTLF LKALRSLGPT LVTVVDEDAD FTACDVVRRL RSAFNYLWIP YDAVDTFLPK GSEQRRWYEA GVGWKIENVI AEEGVQRVER LERKGRWAQR
401: MRATGFRSVR FTEEAAGEVK SMLDEHAAGW GMKRDEEDLM LTWKGHNVVF ATAWLPA

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.