Factsheet for GSMUA_Achr6P21350_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P02380_001	Banana	cytosol	78.55	77.02
GSMUA_Achr10P...	Banana	cytosol	66.58	66.42
VIT_00s0226g00070.t01	Wine grape	plastid	69.08	63.53
PGSC0003DMT400037884	Potato	cytosol	65.09	62.29
KRH10104	Soybean	cytosol	67.83	62.24
Solyc08g014030.1.1	Tomato	cytosol	64.34	61.72
KRH23228	Soybean	cytosol	68.08	61.63
GSMUA_Achr8P30950_001	Banana	mitochondrion	50.62	38.3
GSMUA_Achr4P16460_001	Banana	nucleus	49.88	37.66
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.88	37.59
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	30.92	29.38
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	32.17	28.23
GSMUA_Achr10P...	Banana	plastid	31.92	28.13
GSMUA_Achr6P07790_001	Banana	plastid	31.92	28.01
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	19.7	17.67

Protein Annotations

EnsemblPlants:GSMUA_Achr6P21350_001	EnsemblPlants:GSMUA_Achr6T21350_001	EnsemblPlantsGene:GSMUA_Achr6G21350_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF36	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI0002960A85
UniProt:M0T8Y3	MapMan:15.5.12	MapMan:26.3.1.4	:	:	:

Description

Protein SHORT-ROOT [Source:GMGC_GENE;Acc:GSMUA_Achr6G21350_001]

Coordinates

chr6:-:17107904..17109109

Molecular Weight (calculated)

45330.9 Da

IEP (calculated)

5.059

GRAVY (calculated)

-0.272

Length

401 amino acids

Sequence
(BLAST)

001: MQNPHPHHHQ ASASCLLELD DPDATEKWAA ELLRECARAI SEKDSGKIHR LLWMLNELAS PYGDCEQKLA SYFLQALFCK ATESGERCYK TSLSVAEMSH
101: SFESTRKVIL QFQEVSPWTT FGHAASNGAI LEALEGEAKL HIIDISNTYC TQWPTLLEAL ATRNDDSPHL RLTVVATAGV GGFVMDEIGQ RMGRFARLMG
201: VPFEFHVIRD LSRLDELREE ELGLREGEAV AVNCIGALRR VGVEQRQAFI RMLRTLRPRV VTVVEEEADF TSCSGEFAVC FDECLRFYTT YLETLEESFP
301: PTSNERLALE RECSRSILRV LACDGDRVGD CERREKGSQW CRRLIEAFSS NSFSDDVVDD LKALLKRYRA GWSLMPAEGD ASGLYLTWKQ QPVVWACAWK
401: P

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.