Factsheet for GSMUA_Achr1P22470_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, nucleus, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr4P23590_001
GSMUA_Achr5P21440_001
GSMUA_Achr6P08220_001
GSMUA_Achr6P27030_001
GSMUA_Achr7P14780_001
GSMUA_Achr7P22720_001
GSMUA_Achr8P00470_001
GSMUA_Achr8P09400_001
GSMUA_Achr9P06650_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	GSMUA_Achr10P...	AT1G03840.1	17785527
AT4G37650.1	GSMUA_Achr6P27030_001	AT1G03840.1	17785527
AT4G37650.1	GSMUA_Achr7P14780_001	AT1G03840.1	17785527
AT4G37650.1	GSMUA_Achr9P06650_001	AT1G03840.1	17785527
AT4G37650.1	GSMUA_Achr6P08220_001	AT3G12280.1	22921914
AT4G37650.1	GSMUA_Achr8P00470_001	AT3G12280.1	22921914
AT4G37650.1	GSMUA_Achr11P...	AT3G54220.1	17446396
AT4G37650.1	GSMUA_Achr5P21440_001	AT3G54220.1	17446396
AT4G37650.1	GSMUA_Achr8P09400_001	AT3G54220.1	17446396
AT4G37650.1	GSMUA_Achr11P...	AT3G54220.1	17785527
AT4G37650.1	GSMUA_Achr5P21440_001	AT3G54220.1	17785527
AT4G37650.1	GSMUA_Achr8P09400_001	AT3G54220.1	17785527
AT4G37650.1	GSMUA_Achr11P...	AT3G54220.1	18500650
AT4G37650.1	GSMUA_Achr5P21440_001	AT3G54220.1	18500650
AT4G37650.1	GSMUA_Achr8P09400_001	AT3G54220.1	18500650
AT4G37650.1	GSMUA_Achr11P...	AT3G54220.1	22921914
AT4G37650.1	GSMUA_Achr5P21440_001	AT3G54220.1	22921914
AT4G37650.1	GSMUA_Achr8P09400_001	AT3G54220.1	22921914
AT4G37650.1	GSMUA_Achr7P22720_001	AT5G03150.1	17785527
AT4G37650.1	GSMUA_Achr4P23590_001	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30950_001	Banana	mitochondrion	75.75	76.04
TraesCS2D01G194800.1	Wheat	cytosol, plastid	51.32	71.47
GSMUA_Achr4P16460_001	Banana	nucleus	64.47	64.6
Zm00001d006721_P001	Maize	nucleus	65.04	59.04
KRH28353	Soybean	plastid	51.69	57.05
KRH77129	Soybean	plastid	50.38	56.3
PGSC0003DMT400055239	Potato	nucleus	47.93	56.04
Zm00001d021973_P001	Maize	nucleus	61.09	54.9
TraesCS2B01G214600.1	Wheat	nucleus, plastid	61.09	54.62
TraesCS2A01G192600.1	Wheat	plastid	60.9	54.55
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	50.38	54.25
OQU90176	Sorghum	nucleus, plastid	60.71	54.01
Bra010606.1-P	Field mustard	nucleus	47.37	53.85
Os07t0586900-01	Rice	plastid	60.34	53.32
KRH58109	Soybean	cytosol, plastid	49.06	52.3
KRH04424	Soybean	plastid	49.06	51.89
CDY50264	Canola	nucleus, plastid	46.24	51.79
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	58.46	51.58
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	49.06	51.48
HORVU2Hr1G035730.4	Barley	cytosol, plastid	57.33	51.17
AT4G37650.1	Thale cress	cytosol, plastid	50.94	51.04
GSMUA_Achr9P02380_001	Banana	cytosol	38.91	50.61
Bra011777.1-P	Field mustard	cytosol, plastid	50.19	50.09
GSMUA_Achr6P21350_001	Banana	cytosol	37.59	49.88
CDX72645	Canola	cytosol, plastid	49.44	49.44
Bra017842.1-P	Field mustard	cytosol, plastid	49.25	49.25
CDY44032	Canola	cytosol, plastid	48.5	49.14
Zm00001d029607_P001	Maize	plastid	57.14	48.25
EER94653	Sorghum	plastid	57.89	46.39
GSMUA_Achr10P...	Banana	cytosol	34.96	46.27
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	24.06	30.33
GSMUA_Achr10P...	Banana	plastid	23.68	27.69
GSMUA_Achr6P07790_001	Banana	plastid	23.68	27.57
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	23.31	27.13
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	20.3	24.16

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356
GO:GO:0009058	GO:GO:0009956	GO:GO:0009987	GO:GO:0043565	GO:GO:0048366	EnsemblPlantsGene:GSMUA_Achr1G22470_001
EnsemblPlants:GSMUA_Achr1P22470_001	EnsemblPlants:GSMUA_Achr1T22470_001	InterPro:IPR005202	UniProt:M0S255	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI000294F4A0	SEG:seg

Description

Protein SHORT-ROOT 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G22470_001]

Coordinates

chr1:+:16960159..16961757

Molecular Weight (calculated)

58661.0 Da

IEP (calculated)

5.368

GRAVY (calculated)

-0.416

Length

532 amino acids

Sequence
(BLAST)

001: MDTLFRFVSP QSSHQQSSYS LSRSSSSSRS SEAPQINYKD YYYYFHQEQE EQQQQYYQEE CGTNHLVYMD EDFSSSSSSK HLHHPHRPPS STTSTTTPAP
101: TPIFDPADLS FPHDLNLDFS SPSSSAVGAS GAGGRWASQL LVECARAVAG RDSQRVQQLM WTLNEVSSPY GDTEQKVAAY FLQGLFARLT SSGPRTLCSL
201: SAASDRNCSF DSTRRTALRF QELSPWSSFG HVAANGAILE AFLDPSSALQ RLHILDLSNT FCTQWPTLLE ALATRSSDDT PHLTITTVVS SVSPSSSVQR
301: VMKEIGKRME KFARLMGVPF RFNVVHHAGD LSDLDLDSLD LREGSGVALA INCVNALHGI SPAGRRRDEL ISSLRRLQPR IVTVVEEEAD LGGGEGGGEE
401: AGEAFLKGFR ESVRFFTAYF ESLEESFPRT SNERLALERS AGRAVVDLVA CPAADSAERR ETAAGWSRRM RAAGFAPAAF SEDVADDVRA LLRRYREGWS
501: MRAAAEESEE AAGGIFLDWK EQPVVWASAW KP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.