Factsheet for GSMUA_Achr6P24300_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, plastid

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g02770.t01	Wine grape	cytosol	66.35	62.92
PGSC0003DMT400067360	Potato	cytosol	61.85	61.12
Solyc07g052960.1.1	Tomato	cytosol	60.66	59.67
TraesCS1D01G319500.1	Wheat	cytosol	55.69	56.63
TraesCS1B01G332000.1	Wheat	cytosol	55.21	56.14
TraesCS1A01G319700.1	Wheat	cytosol	55.21	56.14
HORVU1Hr1G066390.1	Barley	cytosol	54.98	55.9
Zm00001d038609_P001	Maize	cytosol	56.4	55.87
KRH22503	Soybean	cytosol	61.61	55.67
EES18455	Sorghum	cytosol	55.92	55.66
KRH26849	Soybean	cytosol	60.66	55.65
Os05t0500600-01	Rice	cytosol	54.27	53.88
KXG33889	Sorghum	cytosol	35.78	47.04
GSMUA_Achr10P...	Banana	plastid	46.45	43.08
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	46.45	42.89
GSMUA_Achr6P07790_001	Banana	plastid	46.45	42.89
GSMUA_Achr6P21350_001	Banana	cytosol	29.38	30.92
GSMUA_Achr9P02380_001	Banana	cytosol	29.86	30.81
GSMUA_Achr10P...	Banana	cytosol	27.25	28.61
GSMUA_Achr8P30950_001	Banana	mitochondrion	31.04	24.72
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	30.33	24.06
GSMUA_Achr4P16460_001	Banana	nucleus	28.44	22.6
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	20.85	19.69

Protein Annotations

EnsemblPlants:GSMUA_Achr6P24300_001	EnsemblPlants:GSMUA_Achr6T24300_001	EnsemblPlantsGene:GSMUA_Achr6G24300_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF5	PFAM:PF03514	PFscan:PS50985	UniParc:UPI0002954A80	UniProt:M0T9S6
MapMan:15.5.12	:	:	:	:	:

Description

Putative Scarecrow-like protein 32 [Source:GMGC_GENE;Acc:GSMUA_Achr6G24300_001]

Coordinates

chr6:-:24844924..24846255

Molecular Weight (calculated)

46638.5 Da

IEP (calculated)

5.292

GRAVY (calculated)

-0.160

Length

422 amino acids

Sequence
(BLAST)

001: MRAELRGSTP GHVSVPDPNP FDTPHGSLSG ALKGCLGSLD GAGIEKLLLH CATAVEANDA TLVQQVMWVL NNIASSHGDP NQRLTSWFLR ALVTRASQFC
101: PTAIPSATTG LTRARPMTAT ELVGYVDLTP WHRFGFTAAN GAILKMVQGR RKVHVLDFSI YYCMQWPTLI DALSGRPEGP PLLRITMPSA RPSVPPHLNV
201: STEEIGLKLA NFAKSRDVPL EFHVFASCLL DPSSLGLREG EALVVNCQSW LRYLPEGSGR ATDDLSSRDA FMELIHRLNP CLVTVTDEDA DLDSARLTSR
301: IMSCFNYLWI PFDALETFLP KDSPQRLAYE ADIGQKIENI IGFEGEERME RLESGARFSQ RMTRAGFESF PFDEETVSEV KLLVDEHASA WGLKREEDTL
401: VLTWKGHNSV FTTAWVPSGY DG

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.