Factsheet for Solyc07g052960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067360	Potato	cytosol	89.74	90.16
VIT_12s0059g02770.t01	Wine grape	cytosol	69.93	67.42
KRH26849	Soybean	cytosol	65.97	61.52
KRH22503	Soybean	cytosol	66.43	61.03
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	59.67	60.66
TraesCS1D01G319500.1	Wheat	cytosol	48.72	50.36
TraesCS1A01G319700.1	Wheat	cytosol	48.25	49.88
TraesCS1B01G332000.1	Wheat	cytosol	47.79	49.4
Os05t0500600-01	Rice	cytosol	48.72	49.18
HORVU1Hr1G066390.1	Barley	cytosol	47.55	49.16
EES18455	Sorghum	cytosol	48.25	48.82
Zm00001d038609_P001	Maize	cytosol	48.25	48.59
Solyc02g092570.1.1	Tomato	plastid	46.62	45.66
KXG33889	Sorghum	cytosol	32.63	43.61
Solyc08g014030.1.1	Tomato	cytosol	27.97	28.71
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	30.07	25.44
Solyc03g123400.1.1	Tomato	extracellular, nucleus	24.01	19.0
Solyc12g049320.1.1	Tomato	nucleus	9.56	15.36

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	UniProt:K4CFJ4	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF5
EnsemblPlantsGene:Solyc07g052960.1	EnsemblPlants:Solyc07g052960.1.1	InterPro:TF_GRAS	UniParc:UPI000276BC14	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:61367195..61368484

Molecular Weight (calculated)

48613.9 Da

IEP (calculated)

5.281

GRAVY (calculated)

-0.245

Length

429 amino acids

Sequence
(BLAST)

001: MNSTTIPLQN PSFFNNSQSS LAGALQGCIG SLDGACLEKL LLHCASALEN NDVTLAQQVM WVLNNLASSN GDPNQRLTSW FLRALISRAS RVYPNATNLH
101: GSSNLERRLM SVTELAGYVD LIPWHRFGFC ASNSVIYKAI ERQTKVHILD FSITHCMQWP TLIDAIAKRP EGPPSLRISV PSWRPQVPPL LNVSSEEVGQ
201: RLANFAKFRD VPFEFHVIED LNYDMFLSQL NPSTLQIRDD EALVVNCQNW LRYLHDDEQI KGALSSRDIF LDRVKDLNPC IVTIVDEDCD LGNPTTLTSR
301: IATCFNYLWI PFDALETFLP KDSKQRLDYE AEIGHKIENI IGFEGNQRIE RLESCNKFSQ RMENSGYMSV PFSEETIKEV KSLLDEHASG WGMKKEEHDM
401: LVLTWKGHNS VYATSWVIVS PPHMDMSSL

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.