Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g052960.1.1 | Tomato | cytosol | 15.36 | 9.56 |
| Solyc08g014030.1.1 | Tomato | cytosol | 12.73 | 8.13 |
| Solyc02g092370.1.1 | Tomato | mitochondrion, nucleus | 14.23 | 7.5 |
| Solyc03g123400.1.1 | Tomato | extracellular, nucleus | 14.61 | 7.2 |
| Solyc02g092570.1.1 | Tomato | plastid | 11.61 | 7.08 |
Protein Annotations
| MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:2000032 | InterPro:IPR005202 | UniProt:K4DFL2 | PFAM:PF03514 |
| PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF40 | InterPro:SCL29/NSP1 | EnsemblPlantsGene:Solyc12g049320.1 | EnsemblPlants:Solyc12g049320.1.1 |
| InterPro:TF_GRAS | UniParc:UPI00027699EA | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:-:37064111..37064987
Molecular Weight (calculated)
29781.3 Da
IEP (calculated)
5.886
GRAVY (calculated)
-0.635
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIDETTSDP ISEWLDSPLS YFPSLLDDES YSIDDLLDES YSLDDIYEDS WWAPNESINQ EIHINNNNDN SLPCFDTSFP VTTASTVSLE PVISSHLPPL
101: DSSKKRKGND SGYNPKASRK NQNRRINDAD TRRTTGHKKA THKSSTGNNG NNREGRWAEQ LLNPCAAAIT AGNLNRVQHL LYVLRELSSL NGDANHRLAA
201: RGLQALTYYL STPCPTSLSS ASAATFASTN PKFFKNSLIN FNEISPWFRI PNSIFLMVFN GQHCSRS
101: DSSKKRKGND SGYNPKASRK NQNRRINDAD TRRTTGHKKA THKSSTGNNG NNREGRWAEQ LLNPCAAAIT AGNLNRVQHL LYVLRELSSL NGDANHRLAA
201: RGLQALTYYL STPCPTSLSS ASAATFASTN PKFFKNSLIN FNEISPWFRI PNSIFLMVFN GQHCSRS
001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
Arabidopsis Description
SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.