Factsheet for Solyc02g092570.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064187	Potato	plastid	95.89	95.89
VIT_07s0129g00340.t01	Wine grape	plastid	79.45	76.48
GSMUA_Achr6P07790_001	Banana	plastid	64.61	61.93
AT5G67411.1	Thale cress	cytosol, mitochondrion, nucleus	28.54	61.88
GSMUA_Achr10P...	Banana	plastid	63.7	61.32
KRH04459	Soybean	plastid	67.12	61.0
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	62.1	59.52
CDY12844	Canola	cytosol, mitochondrion, plastid	57.53	58.2
AT3G49950.1	Thale cress	mitochondrion	54.11	57.8
KRH58050	Soybean	cytosol	68.49	57.14
EER97471	Sorghum	cytosol	59.13	56.92
Zm00001d021998_P001	Maize	plastid	59.13	56.8
Zm00001d006744_P001	Maize	plastid	58.22	55.92
Os07t0589200-00	Rice	cytosol	59.82	55.39
HORVU2Hr1G035120.1	Barley	cytosol	57.76	55.24
TraesCS2D01G193300.1	Wheat	plastid	57.76	55.12
Bra036041.1-P	Field mustard	mitochondrion	52.51	55.02
CDY30617	Canola	mitochondrion	52.28	54.78
TraesCS2A01G194600.1	Wheat	plastid	57.31	54.68
CDY58198	Canola	mitochondrion	52.05	54.55
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	57.08	49.51
Solyc07g052960.1.1	Tomato	cytosol	45.66	46.62
Solyc08g014030.1.1	Tomato	cytosol	26.94	28.23
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	26.71	23.08
Solyc03g123400.1.1	Tomato	extracellular, nucleus	23.97	19.37
Solyc12g049320.1.1	Tomato	nucleus	7.08	11.61

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	UniProt:K4BD53	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF51
EnsemblPlantsGene:Solyc02g092570.1	EnsemblPlants:Solyc02g092570.1.1	InterPro:TF_GRAS	UniParc:UPI0002768123	:	:

Description

No Description!

Coordinates

chr2:+:53622718..53624034

Molecular Weight (calculated)

49437.2 Da

IEP (calculated)

5.607

GRAVY (calculated)

-0.127

Length

438 amino acids

Sequence
(BLAST)

001: MQFTESLPPQ VSSFSSLMMN KDSSTNNNQI QRARPWPGFH TSKNLGNIGD TNCMEQLLVH CANAIESNDA TLAQQILWVL NNIAPPDGDS NQRLTCGFLR
101: ALILRAAKIG TCKLLTANLN HSMETHKFSI IELASFVDLT PWHRFGFTAA NASILEAVEG YSIIHIVDFS LTHCMQIPTL IDAVSTRVEG PPLIKLTVAG
201: ATEDLPPMLD LSYEELGAKL VNFARSRNVM MEFRVIPSSS SDGFSNVIEQ LRVQNLIRPD NGEALVINCH MMLHYIPEET TVISNSFRAM FLKAIRNLDP
301: TIVVLVDEDA DFTSNNLVCR LRSAFNYLWI PYDTVDTFLP RGSKQRQWYE ADICWKIENV IAQEGIQRLE RLEPKSQWVQ RMRNANFRSS GFSEEGVTEV
401: KNMLDEHAAG WGLKRDEEYL VLTWKGHNVV FATAWVPL

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.