Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G193300.1 | Wheat | plastid | 94.1 | 93.9 |
| TraesCS2A01G194600.1 | Wheat | plastid | 93.67 | 93.46 |
| EER97471 | Sorghum | cytosol | 84.06 | 84.62 |
| Zm00001d021998_P001 | Maize | plastid | 82.75 | 83.11 |
| Zm00001d006744_P001 | Maize | plastid | 82.31 | 82.68 |
| Os07t0589200-00 | Rice | cytosol | 83.62 | 80.97 |
| TraesCS2B01G212300.1 | Wheat | endoplasmic reticulum, plasma membrane | 89.08 | 80.79 |
| GSMUA_Achr10P... | Banana | plastid | 64.41 | 64.84 |
| GSMUA_Achr6P16880_001 | Banana | cytosol, plasma membrane, plastid | 62.88 | 63.02 |
| GSMUA_Achr6P07790_001 | Banana | plastid | 61.57 | 61.71 |
| Solyc02g092570.1.1 | Tomato | plastid | 55.24 | 57.76 |
| VIT_07s0129g00340.t01 | Wine grape | plastid | 57.21 | 57.58 |
| PGSC0003DMT400064187 | Potato | plastid | 54.8 | 57.31 |
| AT3G49950.1 | Thale cress | mitochondrion | 49.13 | 54.88 |
| CDY12844 | Canola | cytosol, mitochondrion, plastid | 50.87 | 53.81 |
| KRH04459 | Soybean | plastid | 54.8 | 52.07 |
| AT5G67411.1 | Thale cress | cytosol, mitochondrion, nucleus | 22.93 | 51.98 |
| CDY58198 | Canola | mitochondrion | 47.16 | 51.67 |
| CDY30617 | Canola | mitochondrion | 46.94 | 51.44 |
| Bra036041.1-P | Field mustard | mitochondrion | 46.72 | 51.2 |
| KRH58050 | Soybean | cytosol | 55.02 | 48.0 |
| HORVU1Hr1G066390.1 | Barley | cytosol | 40.61 | 44.82 |
| HORVU2Hr1G104170.1 | Barley | cytosol | 9.61 | 30.99 |
| HORVU2Hr1G104160.1 | Barley | cytosol | 15.07 | 26.24 |
| HORVU5Hr1G117780.1 | Barley | mitochondrion | 22.71 | 24.41 |
| HORVU5Hr1G097760.3 | Barley | mitochondrion, plastid | 20.09 | 24.4 |
| HORVU7Hr1G060780.1 | Barley | cytosol, plastid | 22.93 | 21.83 |
| HORVU2Hr1G035730.4 | Barley | cytosol, plastid | 27.73 | 21.31 |
| HORVU2Hr1G040860.3 | Barley | mitochondrion | 10.48 | 20.87 |
| HORVU7Hr1G115720.3 | Barley | mitochondrion | 20.31 | 20.62 |
Protein Annotations
| EMBL:AK362740 | EnsemblPlants:HORVU2Hr1G035120.1 | EnsemblPlantsGene:HORVU2Hr1G035120 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF51 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000200614C |
| UniProt:F2DFS3 | MapMan:15.5.12 | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DFS3]
Coordinates
chrchr2H:-:146366257..146368654
Molecular Weight (calculated)
49554.3 Da
IEP (calculated)
5.545
GRAVY (calculated)
0.079
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQFTHAAVT APPLYPNGHH GLGLGLFLDV GAPRARPWPA AGSFPTLPPS SKISLGNLNS AGCMEQLLVH CANAIEANDA TLTQQILWVL NNIAPADGDS
101: NQRLTAAFLC ALVARASRTG ACKAVTAAVA AAVESAALHV HRFTAVELAS FVDLTPWHRF GYMAANHAIL EAVEGFAVVH VVDLSTTHCM QIPTLIDMLA
201: SRVEGPPILR LTVADVGCSG PPPALDMSYE ELGAKLVNFA RSRNVTMDFR MVPTSPADAF TSLVDQLRVQ QLVSDGTEAL VVNCHMLLHT VPDETAGSVS
301: LTQSVSLRTM LLKSIRTLDP TLVVVAEEDA EFTAGDVVGR LRAAFNFLWI PYDAVDTFLP KGSQQRRWYE AEVGWKVENV LAQEGVDRVE RQEDRARWGQ
401: RMSGAGFRSV AFGEETAGEI RTMLSEHAAG WGMKREDDDL MLTWKGHNVV FASAWAPS
101: NQRLTAAFLC ALVARASRTG ACKAVTAAVA AAVESAALHV HRFTAVELAS FVDLTPWHRF GYMAANHAIL EAVEGFAVVH VVDLSTTHCM QIPTLIDMLA
201: SRVEGPPILR LTVADVGCSG PPPALDMSYE ELGAKLVNFA RSRNVTMDFR MVPTSPADAF TSLVDQLRVQ QLVSDGTEAL VVNCHMLLHT VPDETAGSVS
301: LTQSVSLRTM LLKSIRTLDP TLVVVAEEDA EFTAGDVVGR LRAAFNFLWI PYDAVDTFLP KGSQQRRWYE AEVGWKVENV LAQEGVDRVE RQEDRARWGQ
401: RMSGAGFRSV AFGEETAGEI RTMLSEHAAG WGMKREDDDL MLTWKGHNVV FASAWAPS
001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI
Arabidopsis Description
SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.