Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12844 | Canola | cytosol, mitochondrion, plastid | 81.68 | 38.11 |
| AT3G49950.1 | Thale cress | mitochondrion | 67.82 | 33.41 |
| VIT_07s0129g00340.t01 | Wine grape | plastid | 65.35 | 29.01 |
| Solyc02g092570.1.1 | Tomato | plastid | 61.88 | 28.54 |
| PGSC0003DMT400064187 | Potato | plastid | 61.39 | 28.31 |
| KRH04459 | Soybean | plastid | 62.38 | 26.14 |
| GSMUA_Achr10P... | Banana | plastid | 58.42 | 25.93 |
| GSMUA_Achr6P07790_001 | Banana | plastid | 57.92 | 25.6 |
| GSMUA_Achr6P16880_001 | Banana | cytosol, plasma membrane, plastid | 55.94 | 24.73 |
| KRH58050 | Soybean | cytosol | 62.87 | 24.19 |
| EER97471 | Sorghum | cytosol | 53.96 | 23.96 |
| Zm00001d006744_P001 | Maize | plastid | 52.97 | 23.46 |
| Os07t0589200-00 | Rice | cytosol | 53.96 | 23.04 |
| HORVU2Hr1G035120.1 | Barley | cytosol | 51.98 | 22.93 |
| TraesCS2A01G194600.1 | Wheat | plastid | 51.98 | 22.88 |
| TraesCS2D01G193300.1 | Wheat | plastid | 51.98 | 22.88 |
| Zm00001d021998_P001 | Maize | plastid | 50.99 | 22.59 |
| TraesCS2B01G212300.1 | Wheat | endoplasmic reticulum, plasma membrane | 51.49 | 20.59 |
| AT3G13840.1 | Thale cress | cytosol | 22.28 | 8.82 |
| AT4G37650.1 | Thale cress | cytosol, plastid | 21.78 | 8.29 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:3771574 | EMBL:AB007645 | ProteinID:AED98341.1 | ArrayExpress:AT5G67411 | EnsemblPlantsGene:AT5G67411 |
| RefSeq:AT5G67411 | TAIR:AT5G67411 | RefSeq:AT5G67411-TAIR-G | EnsemblPlants:AT5G67411.1 | TAIR:AT5G67411.1 | EMBL:DQ487622 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 |
| RefSeq:NP_001032167.1 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF51 | UniProt:Q2V2T9 |
| InterPro:TF_GRAS | UniParc:UPI00005DC19F | SEG:seg | : | : | : |
Description
SCL16Putative scarecrow-like protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q2V2T9]
Coordinates
chr5:-:26898077..26899736
Molecular Weight (calculated)
23288.0 Da
IEP (calculated)
4.934
GRAVY (calculated)
-0.180
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIPTLIDSM ANKLHKKPPP LLKLTVIASD AEFHPPPLLG ISYEELGSKL VNFATTRNVA MEFRIISSSY SDGLSSLIEQ LRIDPFVFNE ALVVNCHMML
101: HYIPDEILTS NLRSVFLKEL RDLNPTIVTL IDEDSDFTST NFISRLRSLY NYMWIPYDTA EMFLTRGSEQ RQWYEADISW KIDNVVAKEG AERVERLEPK
201: SR
101: HYIPDEILTS NLRSVFLKEL RDLNPTIVTL IDEDSDFTST NFISRLRSLY NYMWIPYDTA EMFLTRGSEQ RQWYEADISW KIDNVVAKEG AERVERLEPK
201: SR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.