Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011777.1-P | Field mustard | cytosol, plastid | 93.22 | 92.87 |
| Bra017842.1-P | Field mustard | cytosol, plastid | 90.02 | 89.85 |
| CDX72645 | Canola | cytosol, plastid | 89.83 | 89.66 |
| Bra010606.1-P | Field mustard | nucleus | 70.62 | 80.13 |
| CDY50264 | Canola | nucleus, plastid | 71.56 | 80.0 |
| CDY44032 | Canola | cytosol, plastid | 78.72 | 79.62 |
| KRH28353 | Soybean | plastid | 56.69 | 62.45 |
| KRH77129 | Soybean | plastid | 55.93 | 62.4 |
| VIT_07s0129g00030.t01 | Wine grape | cytosol, plastid | 56.87 | 61.13 |
| PGSC0003DMT400055239 | Potato | nucleus | 51.41 | 60.0 |
| KRH04424 | Soybean | plastid | 55.74 | 58.85 |
| Solyc02g092370.1.1 | Tomato | mitochondrion, nucleus | 56.12 | 58.78 |
| TraesCS2D01G194800.1 | Wheat | cytosol, plastid | 41.05 | 57.07 |
| KRH58109 | Soybean | cytosol, plastid | 53.11 | 56.51 |
| GSMUA_Achr1P22470_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 51.04 | 50.94 |
| GSMUA_Achr8P30950_001 | Banana | mitochondrion | 47.83 | 47.92 |
| GSMUA_Achr4P16460_001 | Banana | nucleus | 46.33 | 46.33 |
| OQU90176 | Sorghum | nucleus, plastid | 49.91 | 44.31 |
| Zm00001d006721_P001 | Maize | nucleus | 48.4 | 43.86 |
| Zm00001d021973_P001 | Maize | nucleus | 48.78 | 43.75 |
| Os07t0586900-01 | Rice | plastid | 48.78 | 43.02 |
| TraesCS2B01G214600.1 | Wheat | nucleus, plastid | 47.83 | 42.69 |
| TraesCS2A01G192600.1 | Wheat | plastid | 46.52 | 41.58 |
| Os03t0433200-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 46.33 | 40.8 |
| EER94653 | Sorghum | plastid | 48.02 | 38.4 |
| HORVU2Hr1G035730.4 | Barley | cytosol, plastid | 42.94 | 38.26 |
| Zm00001d029607_P001 | Maize | plastid | 45.2 | 38.1 |
| AT3G49950.1 | Thale cress | mitochondrion | 23.16 | 30.0 |
| AT3G13840.1 | Thale cress | cytosol | 21.09 | 21.96 |
| AT5G67411.1 | Thale cress | cytosol, mitochondrion, nucleus | 8.29 | 21.78 |
Protein Annotations
| MapMan:15.5.12 | MapMan:26.3.1.4 | PDB:5B3G | PDB:5B3H | EntrezGene:829919 | UniProt:A0A178UYJ6 |
| ProteinID:AAF75234.1 | ProteinID:AEE86820.1 | ArrayExpress:AT4G37650 | EnsemblPlantsGene:AT4G37650 | RefSeq:AT4G37650 | TAIR:AT4G37650 |
| RefSeq:AT4G37650-TAIR-G | EnsemblPlants:AT4G37650.1 | TAIR:AT4G37650.1 | EMBL:AY074547 | Unigene:At.2816 | EMBL:BT033026 |
| ProteinID:CAB38304.1 | ProteinID:CAB80430.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005769 | GO:GO:0005770 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 |
| GO:GO:0009058 | GO:GO:0009956 | GO:GO:0009987 | GO:GO:0032350 | GO:GO:0043565 | GO:GO:0045930 |
| GO:GO:0048366 | GO:GO:0055037 | GO:GO:0055072 | InterPro:IPR005202 | RefSeq:NP_195480.1 | ProteinID:OAO98184.1 |
| PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020124 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF9 | UniProt:Q9SZF7 | Symbol:SHR | InterPro:Short-root | InterPro:TF_GRAS |
| UniParc:UPI00000AB228 | SEG:seg | : | : | : | : |
Description
SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
Coordinates
chr4:+:17691687..17693859
Molecular Weight (calculated)
59465.2 Da
IEP (calculated)
5.465
GRAVY (calculated)
-0.417
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.