CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70328
CDX73496
CDX73827
CDX78219
CDX80854
CDX89862
CDY00765
CDY08440
CDY10404
CDY11241
CDY18188
CDY27670
CDY32514
CDY42141
CDY44344
CDY50559
CDY52391
CDY52614
CDY64484
CDY72283

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	CDX89862	AT1G03840.1	17785527
AT4G37650.1	CDY18188	AT1G03840.1	17785527
AT4G37650.1	CDY32514	AT1G03840.1	17785527
AT4G37650.1	CDY72283	AT1G03840.1	17785527
AT4G37650.1	CDX73827	AT3G12280.1	22921914
AT4G37650.1	CDY00765	AT3G12280.1	22921914
AT4G37650.1	CDY08440	AT3G12280.1	22921914
AT4G37650.1	CDY42141	AT3G12280.1	22921914
AT4G37650.1	CDY50559	AT3G12280.1	22921914
AT4G37650.1	CDY52391	AT3G12280.1	22921914
AT4G37650.1	CDY52614	AT3G12280.1	22921914
AT4G37650.1	CDX73496	AT3G54220.1	17446396
AT4G37650.1	CDX78219	AT3G54220.1	17446396
AT4G37650.1	CDX73496	AT3G54220.1	17785527
AT4G37650.1	CDX78219	AT3G54220.1	17785527
AT4G37650.1	CDX73496	AT3G54220.1	18500650
AT4G37650.1	CDX78219	AT3G54220.1	18500650
AT4G37650.1	CDX73496	AT3G54220.1	22921914
AT4G37650.1	CDX78219	AT3G54220.1	22921914
AT4G37650.1	CDX70328	AT5G03150.1	17785527
AT4G37650.1	CDX80854	AT5G03150.1	17785527
AT4G37650.1	CDY10404	AT5G03150.1	17785527
AT4G37650.1	CDY11241	AT5G03150.1	17785527
AT4G37650.1	CDY44344	AT5G03150.1	17785527
AT4G37650.1	CDY27670	AT5G41920.1	18500650
AT4G37650.1	CDY64484	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010606.1-P	Field mustard	nucleus	90.53	91.88
CDY44032	Canola	cytosol, plastid	84.63	76.57
CDX72645	Canola	cytosol, plastid	80.21	71.62
AT4G37650.1	Thale cress	cytosol, plastid	80.0	71.56
PGSC0003DMT400055239	Potato	nucleus	55.58	58.02
KRH28353	Soybean	plastid	56.42	55.6
KRH77129	Soybean	plastid	55.58	55.46
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	56.42	54.25
TraesCS2D01G194800.1	Wheat	cytosol, plastid	43.37	53.93
KRH58109	Soybean	cytosol, plastid	55.37	52.71
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	56.0	52.47
KRH04424	Soybean	plastid	54.95	51.89
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	51.79	46.24
GSMUA_Achr8P30950_001	Banana	mitochondrion	49.26	44.15
GSMUA_Achr4P16460_001	Banana	nucleus	48.63	43.5
Zm00001d006721_P001	Maize	nucleus	49.68	40.27
Zm00001d021973_P001	Maize	nucleus	50.11	40.2
OQU90176	Sorghum	nucleus, plastid	50.32	39.97
Os07t0586900-01	Rice	plastid	49.89	39.37
TraesCS2A01G192600.1	Wheat	plastid	48.84	39.06
TraesCS2B01G214600.1	Wheat	nucleus, plastid	48.63	38.82
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	49.26	38.81
HORVU2Hr1G035730.4	Barley	cytosol, plastid	45.68	36.41
Zm00001d029607_P001	Maize	plastid	47.58	35.87
EER94653	Sorghum	plastid	49.05	35.09
CDY58198	Canola	mitochondrion	24.63	27.99
CDY30617	Canola	mitochondrion	24.42	27.75
CDY12844	Canola	cytosol, mitochondrion, plastid	24.84	27.25
CDX97537	Canola	cytosol	20.63	19.25

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	GO:A0A078ILP2	UniProt:A0A078ILP2	EnsemblPlants:CDY50264	ProteinID:CDY50264
ProteinID:CDY50264.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058
GO:GO:0009956	GO:GO:0009987	GO:GO:0043565	GO:GO:0048366	EnsemblPlantsGene:GSBRNA2T00096260001	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS
UniParc:UPI0004EE77D0	SEG:seg	:	:	:	:

Description

BnaC03g61310DBnaC03g61310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILP2]

Coordinates

chrLK032894:-:105479..106906

Molecular Weight (calculated)

52955.9 Da

IEP (calculated)

6.000

GRAVY (calculated)

-0.403

Length

475 amino acids

Sequence
(BLAST)

001: MDEEDLSSSN SSQHNHHHNN NPSNYYSPFT TPTQYHPATS PTPSSTAAAV AASASLASPY SSGHHPDPSA FSTSQTPPSF DFSANAKWAD SILLEAARAF
101: SDKDTTRAQQ ILWTLNEISS PYGDTEQKLS SYFLQALVNR MTGSGERCYR TMVTAAATEK TCSFEQTRKT MLKFQEVSPW ATFGHVAANG AILEAVDGEA
201: KIHIVDISST FCTQWPILLE ALATRSDDTP HLRLTTIVVA NKYVNDQTAS HRVMKEIGHR MEKFARLMGV PFTFNIIHHA GDLSEFDPNK LDIKSDEVLA
301: VNCVGAMHGI APRGNPRDAL ISKFRRLRPR IMTIVEEEAD LVGEEGFDDE FLRLFGESLR WFRVCFGSLE ESFPRTSTER LTLERAAGRA IVDVVACEPS
401: DSTERRETAR KWSMRMRNGG FDAVGYSDEV ADDVKALLRR YKEGVWSMVQ CSDSAGIFLC WRDQPVVWAS AWRPT

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.