CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68573	nucleus
CDX72453	nucleus
CDX72643	nucleus
CDX75405	nucleus
CDX76265	nucleus
CDX77460	nucleus
CDX83112	nucleus
CDX85167	nucleus
CDX92996	nucleus
CDX94841	nucleus
CDY02095	nucleus
CDY11608	nucleus
CDY16998	nucleus
CDY17797	nucleus
CDY18083	nucleus
CDY22172
CDY23022	nucleus
CDY27567
CDY29570	nucleus
CDY35481
CDY38800	nucleus
CDY40826
CDY49278	nucleus
CDY53612
CDY57741	nucleus
CDY58656
CDY59943	nucleus
CDY64587	nucleus
CDY67142	nucleus
CDY69708	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	CDY16998	AT1G47870.1	20407024
AT3G12280.1	CDY17797	AT1G47870.1	20407024
AT3G12280.1	CDY16998	AT1G47870.1	20706207
AT3G12280.1	CDY17797	AT1G47870.1	20706207
AT3G12280.1	CDY11608	AT1G70210.1	20407024
AT3G12280.1	CDY38800	AT1G70210.1	20407024
AT3G12280.1	CDY59943	AT1G70210.1	20407024
AT3G12280.1	CDY67142	AT1G70210.1	20407024
AT3G12280.1	CDY22172	AT3G08880.1	21798944
AT3G12280.1	CDY58656	AT3G08880.1	21798944
AT3G12280.1	CDY27567	AT3G20740.1	15221456
AT3G12280.1	CDY53612	AT3G20740.1	15221456
AT3G12280.1	CDY27567	AT3G20740.1	18812497
AT3G12280.1	CDY53612	AT3G20740.1	18812497
AT3G12280.1	CDX77460	AT3G24140.1	24571519
AT3G12280.1	CDX85167	AT3G24140.1	24571519
AT3G12280.1	CDX92996	AT3G24140.1	24571519
AT3G12280.1	CDX94841	AT3G24140.1	24571519
AT3G12280.1	CDY18083	AT3G24140.1	24571519
AT3G12280.1	CDY64587	AT3G24140.1	24571519
AT3G12280.1	CDX68573	AT3G50070.1	20407024
AT3G12280.1	CDX83112	AT3G50070.1	20407024
AT3G12280.1	CDY02095	AT3G50070.1	20407024
AT3G12280.1	CDY23022	AT3G50070.1	20407024
AT3G12280.1	CDY35481	AT3G55760.1	20706207
AT3G12280.1	CDY40826	AT3G55760.1	20706207
AT3G12280.1	CDX72453	AT4G34160.1	20407024
AT3G12280.1	CDX75405	AT4G34160.1	20407024
AT3G12280.1	CDX76265	AT4G34160.1	20407024
AT3G12280.1	CDY49278	AT4G34160.1	20407024
AT3G12280.1	CDY57741	AT4G34160.1	20407024
AT3G12280.1	CDY69708	AT4G34160.1	20407024
AT3G12280.1	CDX72643	AT4G37630.1	20407024
AT3G12280.1	CDY29570	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50559	Canola	nucleus	96.83	96.16
CDY08440	Canola	nucleus	91.37	90.65
CDY42141	Canola	cytosol	90.77	89.97
AT3G12280.1	Thale cress	nucleus	87.0	86.57
CDX73827	Canola	nucleus	83.13	82.89
CDY00765	Canola	mitochondrion	85.42	77.15
KRH13310	Soybean	nucleus	69.35	69.55
VIT_04s0008g02780.t01	Wine grape	nucleus	69.35	69.48
KRH20664	Soybean	nucleus	69.54	69.13
KRH63701	Soybean	nucleus	68.95	68.54
PGSC0003DMT400030280	Potato	nucleus	67.16	66.63
Solyc09g091280.2.1	Tomato	cytosol	66.87	66.21
CDY52391	Canola	nucleus	14.88	64.94
GSMUA_Achr8P00470_001	Banana	nucleus	60.71	60.9
Os08t0538700-01	Rice	nucleus	59.72	59.6
EES14166	Sorghum	nucleus	58.83	58.6
Zm00001d052695_P016	Maize	nucleus	57.94	57.99
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	57.94	57.09
TraesCS7A01G264800.1	Wheat	nucleus	56.45	55.73
TraesCS7B01G162700.4	Wheat	nucleus, plastid	56.25	55.53
TraesCS7D01G265600.3	Wheat	nucleus	56.45	55.3
GSMUA_Achr6P08220_001	Banana	nucleus	53.57	53.95
HORVU7Hr1G055440.9	Barley	plastid	56.15	53.2
Os11t0533500-01	Rice	nucleus	47.32	48.77
TraesCS4A01G143200.1	Wheat	plastid	47.32	48.62
TraesCS4B01G162200.1	Wheat	nucleus	46.73	48.01
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	46.73	48.01
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	46.63	47.96
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	41.47	47.88
OQU83580	Sorghum	plastid	40.67	47.23
KXG21076	Sorghum	plastid	40.77	46.92
Zm00001d052666_P014	Maize	nucleus	41.17	45.01
KXG26019	Sorghum	cytosol	11.21	42.01

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	GO:A0A078IT64	UniProt:A0A078IT64	EnsemblPlants:CDY52614	ProteinID:CDY52614
ProteinID:CDY52614.1	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSBRNA2T00007396001
PFAM:PF01857	PFAM:PF01858	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR
InterPro:RB_A	InterPro:RB_B	InterPro:RB_N	InterPro:RB_fam	SMART:SM00385	SMART:SM01367
SMART:SM01368	SUPFAM:SSF47954	UniParc:UPI0004EF35C7	SEG:seg	:	:

Description

BnaCnng22930DBnaCnng22930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT64]

Coordinates

chrLK033108:+:27139..32335

Molecular Weight (calculated)

111887.0 Da

IEP (calculated)

7.959

GRAVY (calculated)

-0.213

Length

1008 amino acids

Sequence
(BLAST)

0001: MEEVQPPVTP PIDPNGKRSE ATLFDLCEKV LSLEGSVCDE ALKLFSETKR ILSANMANIG SGTREEVERF WFAFILYSVK MLLTSVSGDN GFNLCQILRA
0101: LKLNIVDFFK ELPQFVVKAG PVLCELYGAD WENRLQAKEL QANFVHLSLL SKYYKRGYRE FFLTYDANAE MTSANSASYL PDSYRFGWLL FLALRNHAFS
0201: RFKDLVTCTN GLVSVLAILI IHVPCRFRNF SIQDSSRFVK KGDKDVDLVA SLCKIYDASE DELRKIMEKA NNLIETILKK KPSPASACKT DTLDNINPDG
0301: LTYFEDLLDE TSISTSLTTL EKDYDETVCN KGELDERVFI NEEDSLLGSG SLSAGAVNIT GAKRKIDSLS SPARTFISPL SPHKSPAAAK TTVTATPVST
0401: AMTTAKWLRT VICPLPPKPS PGLELFLKSC DRDITNDVTR RAHVILEAIF PNSSLGDQCA GGSLQPVNLM DDIWAQQRRL EAVKLYYRVL EAMCKAEAQI
0501: LHVNNLNSLL TNERFHRCML ACSAELVLAT HKSITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWERG SSMYNSLIVA
0601: KAPLALEINR LGLLAEPMPS LDAIAALINF SEGSSNHVQK PEACPGQNGD IKSPKRLCTD YRSILVERSS FASPVKDRLL ALGNVKSKTL PPPLQSAFAT
0701: PTRPNPGGGG ETCAETGINI FFTKINKLAA VRINGMVERL QLSQQIRESV YRLFQRVLAQ RTSLLFNRHI DQIILCCFYG VAKISQMSLT FREIIYNYRK
0801: QPQCKPLVFR SVFVDSSQGR RQGRVGPDHV DIITFYNDVF IPAVKPLLVE IVPVKKDQAM EANTNPEGHC PGSPKVSVFP SVPDMSPKKV SAVHNVYVSP
0901: LRGSKMDALI SHSSKSYYAC VGESTHAYQS PSKDLSAINN RLNNNNSSNR KRTLKFDVEA GLVSDSMVGN SLSLQNQNQN ETDASNQNQN GSDASSSGGA
1001: PFKTEPQD

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.