Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49278 | Canola | nucleus | 94.44 | 92.14 |
| CDY57741 | Canola | nucleus | 85.0 | 83.84 |
| CDX76265 | Canola | nucleus | 84.72 | 83.56 |
| CDX75405 | Canola | nucleus | 84.44 | 81.5 |
| CDY69708 | Canola | nucleus | 83.89 | 80.75 |
| AT4G34160.1 | Thale cress | nucleus | 84.17 | 80.59 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 47.22 | 55.02 |
| PGSC0003DMT400066557 | Potato | nucleus | 51.94 | 52.23 |
| Solyc01g107730.2.1 | Tomato | nucleus | 52.22 | 51.65 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 54.44 | 50.78 |
| KRG90996 | Soybean | nucleus | 54.72 | 50.13 |
| KRH35760 | Soybean | nucleus | 53.89 | 48.26 |
| CDY02095 | Canola | nucleus | 40.83 | 44.82 |
| CDY01425 | Canola | nucleus | 43.61 | 44.35 |
| CDY23022 | Canola | nucleus | 40.0 | 43.77 |
| CDX68573 | Canola | nucleus | 42.78 | 43.75 |
| CDX83112 | Canola | nucleus | 42.78 | 43.75 |
| CDY12825 | Canola | nucleus | 43.33 | 43.58 |
| CDY30607 | Canola | nucleus | 42.5 | 43.34 |
| CDY17742 | Canola | nucleus | 41.94 | 42.54 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 19.44 | 40.7 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 36.11 | 33.51 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 31.67 | 33.04 |
| CDY11608 | Canola | nucleus | 28.33 | 32.18 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 36.11 | 31.94 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 31.94 | 31.77 |
| CDY38800 | Canola | nucleus | 28.06 | 31.66 |
| CDY13755 | Canola | nucleus | 25.56 | 31.51 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 30.28 | 31.05 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 30.0 | 30.51 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 30.0 | 30.51 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 30.0 | 30.51 |
| CDY67142 | Canola | nucleus | 28.61 | 30.38 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.67 | 30.28 |
| CDX81286 | Canola | nucleus | 21.67 | 29.32 |
| CDY59943 | Canola | nucleus | 29.17 | 29.09 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 32.78 | 28.99 |
| CDY54717 | Canola | nucleus | 21.39 | 28.95 |
| Os09t0111100-01 | Rice | cytosol | 28.89 | 28.57 |
| CDX89480 | Canola | nucleus | 27.22 | 27.61 |
| CDY08795 | Canola | nucleus | 23.61 | 27.6 |
| CDX76917 | Canola | nucleus | 26.94 | 27.4 |
| CDY25602 | Canola | nucleus | 26.94 | 27.25 |
| CDY14561 | Canola | cytosol | 24.44 | 27.08 |
| Zm00001d019696_P001 | Maize | cytosol | 28.89 | 26.87 |
| CDY37828 | Canola | nucleus | 23.06 | 26.86 |
| EER96424 | Sorghum | cytosol | 28.06 | 26.44 |
| CDY33959 | Canola | nucleus | 22.22 | 26.23 |
| Zm00001d005293_P001 | Maize | cytosol | 28.33 | 26.09 |
| CDY29570 | Canola | nucleus | 23.61 | 25.45 |
| CDX72643 | Canola | nucleus | 23.06 | 24.41 |
| CDX69832 | Canola | nucleus | 20.0 | 24.24 |
| CDX97009 | Canola | nucleus | 19.72 | 24.23 |
| CDY22116 | Canola | nucleus | 19.17 | 23.15 |
| CDY21951 | Canola | nucleus | 18.89 | 22.52 |
| CDX90892 | Canola | nucleus | 9.17 | 21.71 |
| CDY40332 | Canola | cytosol | 19.17 | 20.29 |
| CDY55121 | Canola | cytosol | 19.17 | 20.12 |
| CDY10467 | Canola | cytosol | 18.89 | 20.06 |
| CDX80803 | Canola | cytosol | 19.17 | 15.3 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078CBS8 | EnsemblPlants:CDX72453 | ProteinID:CDX72453 | ProteinID:CDX72453.1 |
| ncoils:Coil | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00099965001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF351 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EDEDDD | SEG:seg | : | : | : |
Description
BnaC07g44750D
Coordinates
chrLK031796:+:1317535..1319266
Molecular Weight (calculated)
41421.5 Da
IEP (calculated)
4.769
GRAVY (calculated)
-0.282
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRKEDESR EEQSNSFLLD ALYCEEEKWE DEEEEVEENS SFSSSSPTSP LVLLQQDLFW QDQDLVTLFT KEEEQRLTCL DEVYLATDRK EAVGWILRVN
101: ARYGFSTLAA VLAITYLDKF ICSYSLQRDK PWMLQLVSVA CLSLAAKVEE VHVPLLLDFQ VEETKYVFEA KTIQRMELLL LSTLQWKMHL VTPLSFLDHI
201: IRRLGLKNNS HWDFLNRCHR LILSVISDSR FVGYLPSVVA AATMMRIIEQ VELFDPLSHQ NNLLGVLNIT KEKVEPCYNL ILQLPIDHMG LQIETQSCRK
301: RKNRDSSSSL SSPSCVIDSN PFNSNESSND SWSASSSPPQ QQQEPPLKKT KMEKPILHLS
101: ARYGFSTLAA VLAITYLDKF ICSYSLQRDK PWMLQLVSVA CLSLAAKVEE VHVPLLLDFQ VEETKYVFEA KTIQRMELLL LSTLQWKMHL VTPLSFLDHI
201: IRRLGLKNNS HWDFLNRCHR LILSVISDSR FVGYLPSVVA AATMMRIIEQ VELFDPLSHQ NNLLGVLNIT KEKVEPCYNL ILQLPIDHMG LQIETQSCRK
301: RKNRDSSSSL SSPSCVIDSN PFNSNESSND SWSASSSPPQ QQQEPPLKKT KMEKPILHLS
001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
Arabidopsis Description
CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.