Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX68497 | |
| CDX68573 | nucleus |
| CDX69832 | nucleus |
| CDX72453 | nucleus |
| CDX72643 | nucleus |
| CDX73462 | |
| CDX75405 | nucleus |
| CDX76265 | nucleus |
| CDX78253 | |
| CDX83047 | |
| CDX83112 | nucleus |
| CDX87018 | |
| CDX90892 | nucleus |
| CDX96319 | |
| CDX97009 | nucleus |
| CDY02095 | nucleus |
| CDY03686 | |
| CDY03687 | |
| CDY05870 | |
| CDY11608 | endoplasmic reticulum |
| CDY17286 | |
| CDY19874 | |
| CDY21951 | nucleus |
| CDY22116 | nucleus |
| CDY23022 | nucleus |
| CDY29570 | nucleus |
| CDY37936 | |
| CDY37939 | |
| CDY38800 | endoplasmic reticulum |
| CDY49278 | nucleus |
| CDY55831 | |
| CDY57741 | nucleus |
| CDY59943 | endoplasmic reticulum |
| CDY64339 | |
| CDY66197 | |
| CDY66787 | |
| CDY67142 | endoplasmic reticulum |
| CDY67496 | |
| CDY69708 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82309 | Canola | nucleus | 84.9 | 85.34 |
| CDX92305 | Canola | nucleus | 44.27 | 48.3 |
| CDX99264 | Canola | nucleus | 42.19 | 46.02 |
| AT3G19150.1 | Thale cress | nucleus | 42.19 | 41.33 |
| GSMUA_Achr10P... | Banana | cytosol | 11.98 | 39.66 |
| GSMUA_Achr9P27040_001 | Banana | cytosol, mitochondrion, nucleus | 11.46 | 37.29 |
| EER99015 | Sorghum | plastid | 14.06 | 31.76 |
| KRH71159 | Soybean | nucleus, plastid | 27.6 | 30.11 |
| CDY50958 | Canola | nucleus | 25.52 | 29.52 |
| PGSC0003DMT400066394 | Potato | nucleus | 28.65 | 28.65 |
| KRH50258 | Soybean | nucleus, plastid | 26.56 | 27.27 |
| Solyc01g108610.2.1 | Tomato | nucleus | 30.73 | 27.06 |
| TraesCS5A01G240600.1 | Wheat | plastid | 12.5 | 26.97 |
| CDY28100 | Canola | nucleus | 24.48 | 25.41 |
| TraesCS5B01G238600.1 | Wheat | plastid | 16.67 | 25.2 |
| TraesCS5D01G247100.1 | Wheat | plastid | 17.19 | 25.19 |
| KRH76992 | Soybean | nucleus, plastid | 24.48 | 23.74 |
| KRH04631 | Soybean | plastid | 20.31 | 23.21 |
| KRH57804 | Soybean | plastid | 21.88 | 22.83 |
| VIT_07s0031g00800.t01 | Wine grape | plastid | 25.0 | 22.64 |
| KRH28480 | Soybean | plastid | 23.96 | 22.44 |
| VIT_03s0063g00670.t01 | Wine grape | nucleus | 25.0 | 21.92 |
| HORVU5Hr1G068770.6 | Barley | nucleus | 16.15 | 19.87 |
| GSMUA_Achr2P22370_001 | Banana | nucleus | 20.31 | 18.75 |
| PGSC0003DMT400040785 | Potato | nucleus | 19.79 | 17.51 |
| Solyc02g090680.2.1 | Tomato | nucleus | 18.75 | 16.98 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 15.62 | 13.51 |
Protein Annotations
| MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078GD61 | UniProt:A0A078GD61 | InterPro:CDI | EnsemblPlants:CDY22987 |
| ProteinID:CDY22987 | ProteinID:CDY22987.1 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0071901 | EnsemblPlantsGene:GSBRNA2T00021409001 |
| PFAM:PF02234 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF39 | UniParc:UPI0004EEDD45 | SEG:seg | : |
Description
BnaC03g40820DBnaC03g40820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GD61]
Coordinates
chrLK032138:+:455687..456925
Molecular Weight (calculated)
21055.0 Da
IEP (calculated)
4.574
GRAVY (calculated)
-0.941
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MSERDPNCKR DARALEAPSA SDSQLKKKKL DDDSHGVVFL AVPSPSVASS DDSSRGGCSV TSAGEDDDKS SIICFSSESN EIPRKSPTVS ADLETHQISD
101: DLSVSGRISH RNEANPASEA LGETTEMEAS SADDRKSSPE VSKSPTPAEI EEFLSELENK DQKRFMDKYN FDIVNDKPLQ GRYKWDRVKP LK
101: DLSVSGRISH RNEANPASEA LGETTEMEAS SADDRKSSPE VSKSPTPAEI EEFLSELENK DQKRFMDKYN FDIVNDKPLQ GRYKWDRVKP LK
001: MSERKRELAE EASSTSFSPL KKTKLNDSSD SSPDSHDVIV FAVSSSSVAS SAALASDECS VTIGGEESDQ SSSISSGCFT SESKEIAKNS SSFGVDLEDH
101: QIETETETST FITSNFRKET SPVSEGLGET TTEMESSSAT KRKQPGVRKT PTAAEIEDLF SELESQDDKK KQFIEKYNFD IVNDEPLEGR YKWDRL
101: QIETETETST FITSNFRKET SPVSEGLGET TTEMESSSAT KRKQPGVRKT PTAAEIEDLF SELESQDDKK KQFIEKYNFD IVNDEPLEGR YKWDRL
Arabidopsis Description
KRP6At3g19150 [Source:UniProtKB/TrEMBL;Acc:A6QRA0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.