Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002947.1-P | Field mustard | nucleus | 97.53 | 99.75 |
| CDY19874 | Canola | nucleus | 96.54 | 93.32 |
| AT5G54900.1 | Thale cress | nucleus | 72.84 | 76.23 |
| CDX89287 | Canola | nucleus | 73.09 | 71.5 |
| CDY29263 | Canola | nucleus | 72.59 | 70.17 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 73.33 | 69.72 |
| CDY46671 | Canola | nucleus | 73.83 | 69.7 |
| CDY14290 | Canola | nucleus | 70.86 | 68.82 |
| CDY66423 | Canola | nucleus | 70.62 | 67.14 |
| Solyc07g064510.2.1 | Tomato | plastid | 59.75 | 59.02 |
| PGSC0003DMT400057203 | Potato | cytosol | 58.52 | 58.81 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 61.73 | 54.0 |
| CDY34835 | Canola | nucleus | 51.36 | 52.93 |
| CDY06734 | Canola | mitochondrion | 35.06 | 46.56 |
| CDX82310 | Canola | nucleus | 44.94 | 44.17 |
| CDY16528 | Canola | nucleus | 46.17 | 44.1 |
| CDY32840 | Canola | nucleus | 45.68 | 43.94 |
| CDY50959 | Canola | nucleus | 46.42 | 43.72 |
| CDY29341 | Canola | nucleus | 45.19 | 43.68 |
| CDY68866 | Canola | nucleus | 44.69 | 43.61 |
| CDY28101 | Canola | nucleus | 46.17 | 43.59 |
| CDY22988 | Canola | nucleus | 45.19 | 43.57 |
| CDX99265 | Canola | nucleus | 44.44 | 42.45 |
| CDY18570 | Canola | nucleus | 45.43 | 42.4 |
| CDX92304 | Canola | nucleus | 44.2 | 42.22 |
| CDX95462 | Canola | nucleus | 45.19 | 42.17 |
| CDX95176 | Canola | nucleus | 43.46 | 42.0 |
| CDY52067 | Canola | nucleus | 43.46 | 42.0 |
| CDY13992 | Canola | nucleus | 42.96 | 41.53 |
| CDX92537 | Canola | nucleus | 42.72 | 41.29 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 51.6 | 41.22 |
| Zm00001d021149_P001 | Maize | cytosol | 16.79 | 41.21 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 43.21 | 40.7 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 43.21 | 40.7 |
| CDY63384 | Canola | mitochondrion, nucleus | 27.16 | 26.32 |
| CDY61476 | Canola | nucleus | 26.42 | 25.54 |
| CDY02486 | Canola | nucleus | 26.42 | 25.48 |
| CDY51403 | Canola | nucleus | 25.93 | 25.0 |
| CDY33092 | Canola | nucleus | 25.93 | 24.71 |
| CDY67365 | Canola | plastid | 14.57 | 20.21 |
| CDX81822 | Canola | mitochondrion, nucleus | 26.91 | 20.0 |
| CDX69025 | Canola | nucleus, plastid | 24.94 | 16.53 |
| CDY59539 | Canola | nucleus | 14.81 | 16.39 |
| CDX75397 | Canola | nucleus, plastid | 24.69 | 16.23 |
| CDY72408 | Canola | plastid | 3.7 | 16.13 |
| CDY62723 | Canola | cytosol | 24.44 | 16.05 |
| CDY51957 | Canola | cytosol, plastid | 24.44 | 15.99 |
| CDY66740 | Canola | nucleus | 14.81 | 15.75 |
| CDY67617 | Canola | nucleus | 14.81 | 15.75 |
| CDY43894 | Canola | nucleus | 14.07 | 15.66 |
| CDY38939 | Canola | nucleus | 24.69 | 15.53 |
| CDX89562 | Canola | nucleus | 24.44 | 15.35 |
| CDX89664 | Canola | cytosol | 23.21 | 15.31 |
| CDX79296 | Canola | plastid | 6.91 | 15.3 |
| CDX71223 | Canola | cytosol | 23.7 | 15.05 |
| CDY46079 | Canola | nucleus | 23.21 | 14.94 |
| CDY51045 | Canola | cytosol | 23.95 | 14.85 |
| CDY54068 | Canola | cytosol | 23.95 | 14.85 |
| CDY36634 | Canola | nucleus | 22.72 | 14.18 |
| CDY37935 | Canola | nucleus | 22.72 | 14.13 |
| CDY67921 | Canola | nucleus | 22.47 | 14.11 |
| CDY56198 | Canola | cytosol | 16.79 | 13.91 |
| CDY41472 | Canola | cytosol, plastid | 21.98 | 13.88 |
| CDY03685 | Canola | nucleus | 21.98 | 13.84 |
| CDY57754 | Canola | nucleus | 7.16 | 13.62 |
| CDX96344 | Canola | plastid | 22.96 | 13.6 |
| CDX72826 | Canola | plastid | 22.72 | 13.45 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.48 | 13.43 |
| CDY36684 | Canola | plastid | 21.98 | 13.38 |
| CDY30168 | Canola | cytosol | 17.28 | 13.01 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.42 | 13.0 |
| CDY67364 | Canola | nucleus | 6.67 | 9.22 |
| CDY37229 | Canola | cytosol | 4.2 | 7.98 |
| CDX91689 | Canola | nucleus | 4.69 | 6.23 |
| CDX92325 | Canola | nucleus | 4.44 | 5.59 |
| CDY08990 | Canola | cytosol | 0.25 | 1.01 |
| CDX79295 | Canola | cytosol, plastid | 0.25 | 1.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078FWG3 | UniProt:A0A078FWG3 | EnsemblPlants:CDY17286 | ProteinID:CDY17286 |
| ProteinID:CDY17286.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00095374001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE4951 |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g09200DBnaA10g09200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWG3]
Coordinates
chrLK032072:+:65241..67864
Molecular Weight (calculated)
44371.6 Da
IEP (calculated)
6.255
GRAVY (calculated)
-0.764
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQPPQNAAG AGQQIPSDQQ AYHQQQLSWM MQQQQGQQWN QQSAPSQGQQ PYGSQNPGSD NEIRSLWIGA LQPWMDESYI MTVFAQAGEV QSAKVIRNKL
101: TGMCEGYGFV EFANHAAAER VLQTYNGTQM PNSDQTFRLN WAQAGAGERR QAEGPEYTIF VGDLAPEVTD FMLAETFSNV YASVKGAKVM MDRSTGRTKG
201: YGFVRFGDES EQMRAMGEMN GQYCSSRPMR LGPAANKKPL AMQPGMYQDT QGGGNPGESD PSNTTIFVGA LDASVTDEEL RAVFGQFGEL THVKIPPGKR
301: CGFVQYATRA SAEHALLNLN GTQLGGQSIR LSWGRSPNNQ AQPHQAQWNN GGGGYYGYPP QPQGFEPYGH GAPRPQDPSA YYGGGYGGYG NYQQQRQILP
401: NVKNL
101: TGMCEGYGFV EFANHAAAER VLQTYNGTQM PNSDQTFRLN WAQAGAGERR QAEGPEYTIF VGDLAPEVTD FMLAETFSNV YASVKGAKVM MDRSTGRTKG
201: YGFVRFGDES EQMRAMGEMN GQYCSSRPMR LGPAANKKPL AMQPGMYQDT QGGGNPGESD PSNTTIFVGA LDASVTDEEL RAVFGQFGEL THVKIPPGKR
301: CGFVQYATRA SAEHALLNLN GTQLGGQSIR LSWGRSPNNQ AQPHQAQWNN GGGGYYGYPP QPQGFEPYGH GAPRPQDPSA YYGGGYGGYG NYQQQRQILP
401: NVKNL
001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ
Arabidopsis Description
RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.