CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08990	Canola	cytosol	90.0	90.91
VIT_18s0001g10220.t01	Wine grape	cytosol	67.0	67.0
CDY37229	Canola	cytosol	70.0	32.86
CDY67364	Canola	nucleus	84.0	28.67
CDX92325	Canola	nucleus	60.0	18.63
CDX91689	Canola	nucleus	51.0	16.72
CDX69025	Canola	nucleus, plastid	96.0	15.71
CDX75397	Canola	nucleus, plastid	96.0	15.58
CDY62723	Canola	cytosol	95.0	15.4
CDY51957	Canola	cytosol, plastid	95.0	15.35
CDX89664	Canola	cytosol	84.0	13.68
CDX71223	Canola	cytosol	87.0	13.64
CDY36634	Canola	nucleus	86.0	13.25
CDY54068	Canola	cytosol	80.0	12.25
CDY51045	Canola	cytosol	80.0	12.25
CDX89562	Canola	nucleus	68.0	10.54
CDY67921	Canola	nucleus	65.0	10.08
CDY38939	Canola	nucleus	64.0	9.94
CDY46079	Canola	nucleus	62.0	9.86
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.0	8.18
CDY36684	Canola	plastid	53.0	7.97
CDY41472	Canola	cytosol, plastid	51.0	7.96
CDX96344	Canola	plastid	54.0	7.89
CDX72826	Canola	plastid	54.0	7.89
CDY37935	Canola	nucleus	50.0	7.68
CDY03685	Canola	nucleus	47.0	7.31
CDX92537	Canola	nucleus	8.0	1.91
CDY13992	Canola	nucleus	8.0	1.91
CDX88893	Canola	cytosol, nucleus, peroxisome	8.0	1.86
CDX70874	Canola	cytosol, nucleus, peroxisome	8.0	1.86
CDX79296	Canola	plastid	3.0	1.64
CDY66740	Canola	nucleus	6.0	1.57
CDY67617	Canola	nucleus	6.0	1.57
CDY43894	Canola	nucleus	5.0	1.37
CDY59539	Canola	nucleus	5.0	1.37
CDY34835	Canola	nucleus	5.0	1.27
CDY61476	Canola	nucleus	5.0	1.19
CDY51403	Canola	nucleus	5.0	1.19
CDY02486	Canola	nucleus	5.0	1.19
CDY34639	Canola	nucleus, plastid, vacuole	6.0	1.18
CDY33092	Canola	nucleus	5.0	1.18
CDX81822	Canola	mitochondrion, nucleus	6.0	1.1
CDY06734	Canola	mitochondrion	3.0	0.98
CDX89287	Canola	nucleus	4.0	0.97
CDY14290	Canola	nucleus	4.0	0.96
CDY63384	Canola	mitochondrion, nucleus	4.0	0.96
CDY29263	Canola	nucleus	4.0	0.95
CDX92786	Canola	mitochondrion, nucleus, peroxisome	4.0	0.94
CDY66423	Canola	nucleus	4.0	0.94
CDY46671	Canola	nucleus	4.0	0.93
CDX95176	Canola	nucleus	3.0	0.72
CDY52067	Canola	nucleus	3.0	0.72
CDY56198	Canola	cytosol	3.0	0.61
CDY30168	Canola	cytosol	3.0	0.56
CDY19874	Canola	nucleus	2.0	0.48
CDY17286	Canola	nucleus	1.0	0.25
CDY33264	Canola	mitochondrion, nucleus	0.0	0.0
CDY72408	Canola	plastid	0.0	0.0
CDY68866	Canola	nucleus	0.0	0.0
CDY67365	Canola	plastid	0.0	0.0
CDY57754	Canola	nucleus	0.0	0.0
CDY50959	Canola	nucleus	0.0	0.0
CDY32840	Canola	nucleus	0.0	0.0
CDY29341	Canola	nucleus	0.0	0.0
CDY28101	Canola	nucleus	0.0	0.0
CDY22988	Canola	nucleus	0.0	0.0
CDY18570	Canola	nucleus	0.0	0.0
CDY16528	Canola	nucleus	0.0	0.0
CDX99265	Canola	nucleus	0.0	0.0
CDX95462	Canola	nucleus	0.0	0.0
CDX92304	Canola	nucleus	0.0	0.0
CDX82310	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDX79295	EnsemblPlantsGene:GSBRNA2T00131946001	Gene3D:1.10.1900.10	GO:A0A078CR02	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR002004	InterPro:PABP-dom	InterPro:PABP_HYD	PANTHER:PTHR24012
PANTHER:PTHR24012:SF349	PFAM:PF00658	PFscan:PS51309	ProteinID:CDX79295	ProteinID:CDX79295.1	SMART:SM00517
SUPFAM:SSF63570	UniParc:UPI0004EE2AD0	MapMan:35.1	:	:	:

Description

BnaC06g20080D

Coordinates

chrLK031817:-:1111714..1112242

Molecular Weight (calculated)

10521.6 Da

IEP (calculated)

3.983

GRAVY (calculated)

0.018

Length

100 amino acids

Sequence
(BLAST)

1: MGNNNNITMP IGALASNLAN ASPEQQRTML GENLYPLVEK LEAESAAKVT GMLLEMDQTE VLHLLESPEA LEAKVAEAMD VLRSVAAGGA AEQLASLNLS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.