Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032172.1-P | Field mustard | cytosol | 99.38 | 99.38 |
| CDX89562 | Canola | nucleus | 98.29 | 98.14 |
| CDY67921 | Canola | nucleus | 85.56 | 85.43 |
| AT2G23350.1 | Thale cress | nucleus | 87.11 | 84.74 |
| CDY46079 | Canola | nucleus | 81.52 | 83.47 |
| CDX79295 | Canola | cytosol, plastid | 9.94 | 64.0 |
| CDY62723 | Canola | cytosol | 60.56 | 63.21 |
| CDY51957 | Canola | cytosol, plastid | 60.56 | 63.0 |
| CDX75397 | Canola | nucleus, plastid | 60.09 | 62.82 |
| CDX69025 | Canola | nucleus, plastid | 59.47 | 62.68 |
| CDX89664 | Canola | cytosol | 59.01 | 61.89 |
| CDY08990 | Canola | cytosol | 9.47 | 61.62 |
| CDY67365 | Canola | plastid | 27.8 | 61.3 |
| CDX71223 | Canola | cytosol | 60.09 | 60.66 |
| CDY54068 | Canola | cytosol | 61.02 | 60.18 |
| CDY51045 | Canola | cytosol | 60.87 | 60.03 |
| CDX79296 | Canola | plastid | 16.93 | 59.56 |
| CDY67364 | Canola | nucleus | 26.86 | 59.04 |
| CDY36634 | Canola | nucleus | 59.16 | 58.71 |
| CDY37229 | Canola | cytosol | 17.08 | 51.64 |
| CDY72408 | Canola | plastid | 6.99 | 48.39 |
| CDY41472 | Canola | cytosol, plastid | 47.2 | 47.43 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 46.89 | 46.6 |
| CDY36684 | Canola | plastid | 47.52 | 46.02 |
| CDX96344 | Canola | plastid | 48.6 | 45.76 |
| CDY37935 | Canola | nucleus | 46.12 | 45.62 |
| CDX72826 | Canola | plastid | 48.29 | 45.47 |
| CDY03685 | Canola | nucleus | 44.41 | 44.48 |
| CDY33264 | Canola | mitochondrion, nucleus | 13.04 | 42.0 |
| CDY57754 | Canola | nucleus | 13.51 | 40.85 |
| CDX92325 | Canola | nucleus | 20.34 | 40.68 |
| CDY30168 | Canola | cytosol | 29.04 | 34.76 |
| CDX91689 | Canola | nucleus | 16.15 | 34.1 |
| CDY56198 | Canola | cytosol | 25.78 | 33.95 |
| CDY67617 | Canola | nucleus | 17.08 | 28.87 |
| CDY66740 | Canola | nucleus | 17.08 | 28.87 |
| CDY59539 | Canola | nucleus | 16.3 | 28.69 |
| CDY43894 | Canola | nucleus | 16.15 | 28.57 |
| CDY06734 | Canola | mitochondrion | 12.73 | 26.89 |
| CDY34835 | Canola | nucleus | 15.53 | 25.45 |
| CDY17286 | Canola | nucleus | 15.53 | 24.69 |
| CDX89287 | Canola | nucleus | 15.68 | 24.4 |
| CDX95176 | Canola | nucleus | 15.84 | 24.34 |
| CDY14290 | Canola | nucleus | 15.68 | 24.22 |
| CDY52067 | Canola | nucleus | 15.68 | 24.11 |
| CDY13992 | Canola | nucleus | 15.53 | 23.87 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 15.84 | 23.72 |
| CDY29263 | Canola | nucleus | 15.37 | 23.63 |
| CDY19874 | Canola | nucleus | 15.37 | 23.63 |
| CDY46671 | Canola | nucleus | 15.68 | 23.54 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 15.68 | 23.49 |
| CDY66423 | Canola | nucleus | 15.53 | 23.47 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 15.53 | 23.47 |
| CDY63384 | Canola | mitochondrion, nucleus | 15.22 | 23.45 |
| CDX92537 | Canola | nucleus | 15.22 | 23.39 |
| CDY61476 | Canola | nucleus | 15.22 | 23.39 |
| CDY02486 | Canola | nucleus | 15.22 | 23.33 |
| CDY51403 | Canola | nucleus | 15.06 | 23.1 |
| CDY33092 | Canola | nucleus | 15.22 | 23.06 |
| CDY16528 | Canola | nucleus | 14.75 | 22.41 |
| CDX95462 | Canola | nucleus | 15.06 | 22.35 |
| CDY32840 | Canola | nucleus | 14.6 | 22.33 |
| CDY50959 | Canola | nucleus | 14.75 | 22.09 |
| CDY68866 | Canola | nucleus | 14.13 | 21.93 |
| CDY28101 | Canola | nucleus | 14.6 | 21.91 |
| CDY22988 | Canola | nucleus | 14.29 | 21.9 |
| CDY18570 | Canola | nucleus | 14.75 | 21.89 |
| CDY29341 | Canola | nucleus | 14.13 | 21.72 |
| CDX82310 | Canola | nucleus | 13.82 | 21.6 |
| CDX99265 | Canola | nucleus | 14.13 | 21.46 |
| CDX92304 | Canola | nucleus | 13.82 | 20.99 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 15.84 | 20.12 |
| CDX81822 | Canola | mitochondrion, nucleus | 15.53 | 18.35 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078HNI8 | UniProt:A0A078HNI8 | EnsemblPlants:CDY38939 |
| ProteinID:CDY38939 | ProteinID:CDY38939.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSBRNA2T00066989001 | InterPro:Hud_Sxl_RNA |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 |
| InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PRINTS:PR00961 | PFscan:PS50102 | PFscan:PS51309 |
| PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
| SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI0004EE3CC0 |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g13600DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNI8]
Coordinates
chrLK032435:+:190290..193417
Molecular Weight (calculated)
70148.4 Da
IEP (calculated)
7.771
GRAVY (calculated)
-0.519
Length
644 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQVQAQAPS SSSPPPVTDG TVASDGVNLG AMCSLYVGDL DFNVTDSQLY DYFTEVCQVV SVRVCRDTAT NTSLGYGYVN YSNIDDAEKA LKKLNYTSLN
101: GKMIRVTYSS RDSAARRSGI GNLFIKNLDK SVDNKTLHET FSPCGSIVSC KVATDHMGQS KGYGFVQFES EDSAKSAIEK LNGKILNDKQ IFVGPFLKKE
201: ERETAADKMK FTNVYVKNLS ETTTDDELKS TFGQYGGISS AVVMRDGDGR SRCFGFVNFE NAEDAARAVE GLNGKKFDDK EWYVGKAQKK SERELELSRR
301: YEQGARETGN SFDGLNLYVK NLDDTVTDEK LRELFAEFGT ITSCKVMRDP SGASKGSGFV AFSAASEASR VLNEMNGKMV SGKPLYVALA QRKEERRAKL
401: QAQFSQMRPA FIPGMGPRMP MFPGGAPGQQ FFYGQGPPQM IPHQAGFGYQ PQMVPGMRPG YFGPMMQPGQ QGPRPGGRRS GDGPMRHQPQ QPMPFMQPQM
501: MAGGGRGYRY PRGRNMPDGP MPGGMVPFPY DINGMPLGQP MSAGALASSL SQASPAQQRT ILGETLYPLV NKIEHENAAK VTGMLLEMDQ TEVLHLIESP
601: EALNAKVSEA LDVLRNVNQP TQGSEGKSGS PSGMMAALSI NDHL
101: GKMIRVTYSS RDSAARRSGI GNLFIKNLDK SVDNKTLHET FSPCGSIVSC KVATDHMGQS KGYGFVQFES EDSAKSAIEK LNGKILNDKQ IFVGPFLKKE
201: ERETAADKMK FTNVYVKNLS ETTTDDELKS TFGQYGGISS AVVMRDGDGR SRCFGFVNFE NAEDAARAVE GLNGKKFDDK EWYVGKAQKK SERELELSRR
301: YEQGARETGN SFDGLNLYVK NLDDTVTDEK LRELFAEFGT ITSCKVMRDP SGASKGSGFV AFSAASEASR VLNEMNGKMV SGKPLYVALA QRKEERRAKL
401: QAQFSQMRPA FIPGMGPRMP MFPGGAPGQQ FFYGQGPPQM IPHQAGFGYQ PQMVPGMRPG YFGPMMQPGQ QGPRPGGRRS GDGPMRHQPQ QPMPFMQPQM
501: MAGGGRGYRY PRGRNMPDGP MPGGMVPFPY DINGMPLGQP MSAGALASSL SQASPAQQRT ILGETLYPLV NKIEHENAAK VTGMLLEMDQ TEVLHLIESP
601: EALNAKVSEA LDVLRNVNQP TQGSEGKSGS PSGMMAALSI NDHL
001: MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL
Arabidopsis Description
PAB4Polyadenylate-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O22173]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.