Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037962.1-P | Field mustard | nucleus | 98.35 | 99.29 |
| CDY51403 | Canola | nucleus | 98.12 | 99.29 |
| CDY02486 | Canola | nucleus | 95.06 | 96.19 |
| CDY61476 | Canola | nucleus | 94.35 | 95.7 |
| AT1G54080.2 | Thale cress | nucleus | 89.18 | 88.14 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 77.18 | 78.66 |
| Solyc06g063000.2.1 | Tomato | nucleus | 76.71 | 78.18 |
| CDY63384 | Canola | mitochondrion, nucleus | 76.24 | 77.51 |
| Solyc03g122180.2.1 | Tomato | nucleus | 73.65 | 75.06 |
| PGSC0003DMT400058919 | Potato | nucleus | 73.65 | 75.06 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 70.59 | 70.92 |
| GSMUA_Achr10P... | Banana | mitochondrion | 69.65 | 69.65 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 71.06 | 69.59 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 69.18 | 66.07 |
| GSMUA_Achr11P... | Banana | nucleus | 68.47 | 65.54 |
| Os11t0620100-01 | Rice | nucleus | 68.0 | 65.53 |
| Os07t0615400-01 | Rice | nucleus | 64.94 | 64.64 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 68.0 | 64.37 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 67.29 | 63.84 |
| Zm00001d026528_P001 | Maize | plastid | 32.94 | 63.64 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 63.53 | 63.38 |
| Zm00001d048824_P004 | Maize | nucleus | 66.59 | 63.31 |
| EES08860 | Sorghum | nucleus | 65.65 | 63.27 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 63.76 | 63.17 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 63.29 | 62.85 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 64.24 | 62.19 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 69.65 | 59.68 |
| CDX81822 | Canola | mitochondrion, nucleus | 76.0 | 59.27 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 63.29 | 54.12 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 18.59 | 54.11 |
| Zm00001d026522_P001 | Maize | nucleus | 29.65 | 51.64 |
| CDY34835 | Canola | nucleus | 25.41 | 27.48 |
| CDX82310 | Canola | nucleus | 25.65 | 26.46 |
| CDX89287 | Canola | nucleus | 25.41 | 26.09 |
| CDY29263 | Canola | nucleus | 25.65 | 26.01 |
| CDY22988 | Canola | nucleus | 25.65 | 25.95 |
| CDY17286 | Canola | nucleus | 24.71 | 25.93 |
| CDY19874 | Canola | nucleus | 25.18 | 25.54 |
| CDX95462 | Canola | nucleus | 25.88 | 25.35 |
| CDY68866 | Canola | nucleus | 24.71 | 25.3 |
| CDY29341 | Canola | nucleus | 24.94 | 25.3 |
| CDY16528 | Canola | nucleus | 25.18 | 25.24 |
| CDX99265 | Canola | nucleus | 25.18 | 25.24 |
| CDY28101 | Canola | nucleus | 25.41 | 25.17 |
| CDY50959 | Canola | nucleus | 25.41 | 25.12 |
| CDY18570 | Canola | nucleus | 25.65 | 25.12 |
| CDX92304 | Canola | nucleus | 24.94 | 25.0 |
| CDY32840 | Canola | nucleus | 24.71 | 24.94 |
| CDY14290 | Canola | nucleus | 24.47 | 24.94 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 24.94 | 24.88 |
| CDY46671 | Canola | nucleus | 24.94 | 24.71 |
| CDY06734 | Canola | mitochondrion | 17.65 | 24.59 |
| CDY66423 | Canola | nucleus | 24.47 | 24.41 |
| CDY13992 | Canola | nucleus | 22.82 | 23.15 |
| CDX92537 | Canola | nucleus | 22.35 | 22.67 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 22.35 | 22.09 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 22.12 | 21.86 |
| CDY52067 | Canola | nucleus | 21.41 | 21.72 |
| CDX95176 | Canola | nucleus | 21.41 | 21.72 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 25.88 | 21.7 |
| CDY67365 | Canola | plastid | 14.12 | 20.55 |
| CDY59539 | Canola | nucleus | 16.0 | 18.58 |
| CDY43894 | Canola | nucleus | 15.76 | 18.41 |
| CDY66740 | Canola | nucleus | 16.47 | 18.37 |
| CDY67617 | Canola | nucleus | 16.24 | 18.11 |
| CDY72408 | Canola | plastid | 3.76 | 17.2 |
| CDX69025 | Canola | nucleus, plastid | 22.82 | 15.88 |
| CDY54068 | Canola | cytosol | 24.24 | 15.77 |
| CDY51045 | Canola | cytosol | 24.24 | 15.77 |
| CDX75397 | Canola | nucleus, plastid | 22.82 | 15.75 |
| CDY62723 | Canola | cytosol | 22.82 | 15.72 |
| CDY51957 | Canola | cytosol, plastid | 22.82 | 15.67 |
| CDX89562 | Canola | nucleus | 23.29 | 15.35 |
| CDY38939 | Canola | nucleus | 23.06 | 15.22 |
| CDX71223 | Canola | cytosol | 22.82 | 15.2 |
| CDY57754 | Canola | nucleus | 7.53 | 15.02 |
| CDY46079 | Canola | nucleus | 22.12 | 14.94 |
| CDX89664 | Canola | cytosol | 21.41 | 14.82 |
| CDY56198 | Canola | cytosol | 16.71 | 14.52 |
| CDY67921 | Canola | nucleus | 21.88 | 14.42 |
| CDY36634 | Canola | nucleus | 21.41 | 14.02 |
| CDY30168 | Canola | cytosol | 17.41 | 13.75 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.0 | 13.12 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.12 | 13.0 |
| CDY41472 | Canola | cytosol, plastid | 19.53 | 12.95 |
| CDY36684 | Canola | plastid | 20.24 | 12.93 |
| CDX72826 | Canola | plastid | 20.24 | 12.57 |
| CDX96344 | Canola | plastid | 20.24 | 12.57 |
| CDY37935 | Canola | nucleus | 19.06 | 12.44 |
| CDY03685 | Canola | nucleus | 18.82 | 12.44 |
| CDX79296 | Canola | plastid | 4.24 | 9.84 |
| CDX92325 | Canola | nucleus | 7.06 | 9.32 |
| CDY67364 | Canola | nucleus | 6.12 | 8.87 |
| CDY08990 | Canola | cytosol | 1.18 | 5.05 |
| CDX79295 | Canola | cytosol, plastid | 1.18 | 5.0 |
| CDY37229 | Canola | cytosol | 2.35 | 4.69 |
| CDX91689 | Canola | nucleus | 3.06 | 4.26 |
Protein Annotations
| MapMan:16.9.3 | Gene3D:3.30.70.330 | GO:A0A078H6P4 | UniProt:A0A078H6P4 | EnsemblPlants:CDY33092 | ProteinID:CDY33092 |
| ProteinID:CDY33092.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00053745001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| SUPFAM:SSF81995 | UniParc:UPI00018C7059 | SEG:seg | : | : | : |
Description
BnaC06g06870DBnaC06g06870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6P4]
Coordinates
chrLK032305:+:424777..427761
Molecular Weight (calculated)
47133.5 Da
IEP (calculated)
7.242
GRAVY (calculated)
-0.538
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNPRLKQQQ QQQQQQQQAM MQQALMQQHH SLYHPSLMAP PPPPPQMEPL PSGNLPPGFD PTTCRSVYAG NIHTQVTEVL LQEIFASTGP VESCKLIRKD
101: KSSYGFVHYF DRRSAGLAIM SLNGRHLFGQ PIKVNWAYAT GQREDTSSHF NIFVGDLSPD VTDAALFESF SAFNTCSDAR VMWDQKTGRS RGFGFVSFRN
201: QQDAQNAINE MNGKWLSSRQ IRCNWATKGA TFGDDKHSSD GKSVVELTNG SEDGREISIT NEEAPENNPQ YTTVYVGNLA PEVTQLDLHR LFHTLGAGVI
301: EEVRVQRDKG FGFVRYNTHD EAALAIQMGN SQPFLFNRQI KCSWGNKPTP IGTASNPLPP PAPVAVPGLS PMDLLAYERQ LALAKMHPQA QHSLRHANAA
401: GASAAMYDGG FQNVAAAHQQ LMYYQ
101: KSSYGFVHYF DRRSAGLAIM SLNGRHLFGQ PIKVNWAYAT GQREDTSSHF NIFVGDLSPD VTDAALFESF SAFNTCSDAR VMWDQKTGRS RGFGFVSFRN
201: QQDAQNAINE MNGKWLSSRQ IRCNWATKGA TFGDDKHSSD GKSVVELTNG SEDGREISIT NEEAPENNPQ YTTVYVGNLA PEVTQLDLHR LFHTLGAGVI
301: EEVRVQRDKG FGFVRYNTHD EAALAIQMGN SQPFLFNRQI KCSWGNKPTP IGTASNPLPP PAPVAVPGLS PMDLLAYERQ LALAKMHPQA QHSLRHANAA
401: GASAAMYDGG FQNVAAAHQQ LMYYQ
001: MQNQRLIKQQ QQQQQQQHQQ AMIQQAMMQQ HPSLYHPGVM APPQMEPLPS GNLPPGFDPT TCRSVYAGNI HTQVTEILLQ EIFASTGPIE SCKLIRKDKS
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSDARVM WDQKTGRSRG FGFVSFRNQQ
201: DAQTAINEMN GKWVSSRQIR CNWATKGATF GEDKHSSDGK SVVELTNGSS EDGRELSNED APENNPQFTT VYVGNLSPEV TQLDLHRLFY TLGAGVIEEV
301: RVQRDKGFGF VRYNTHDEAA LAIQMGNAQP FLFSRQIRCS WGNKPTPSGT ASNPLPPPAP ASVPSLSAMD LLAYERQLAL AKMHPQAQHS LRQAGLGVNV
401: AGGTAAMYDG GYQNVAAAHQ QLMYYQ
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSDARVM WDQKTGRSRG FGFVSFRNQQ
201: DAQTAINEMN GKWVSSRQIR CNWATKGATF GEDKHSSDGK SVVELTNGSS EDGRELSNED APENNPQFTT VYVGNLSPEV TQLDLHRLFY TLGAGVIEEV
301: RVQRDKGFGF VRYNTHDEAA LAIQMGNAQP FLFSRQIRCS WGNKPTPSGT ASNPLPPPAP ASVPSLSAMD LLAYERQLAL AKMHPQAQHS LRQAGLGVNV
401: AGGTAAMYDG GYQNVAAAHQ QLMYYQ
Arabidopsis Description
UBP1AOligouridylate-binding protein 1A [Source:UniProtKB/TrEMBL;Acc:F4HV67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.