Factsheet for VIT_04s0043g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
plasma membrane 2
plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g01290.t01
VIT_17s0000g06020.t01
VIT_19s0085g00030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	VIT_19s0085g00030.t01	AT1G16500.1	21798944
AT3G14100.1	VIT_07s0031g01290.t01	AT2G22090.2	12024044
AT3G14100.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026522_P001	Maize	nucleus	46.58	27.87
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	75.34	26.19
PGSC0003DMT400058919	Potato	nucleus	65.75	23.02
Solyc03g122180.2.1	Tomato	nucleus	65.75	23.02
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	64.38	22.54
Solyc06g063000.2.1	Tomato	nucleus	63.7	22.3
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	64.38	22.27
AT3G14100.1	Thale cress	nucleus	61.64	21.08
GSMUA_Achr6P11660_001	Banana	mitochondrion	59.59	20.57
GSMUA_Achr10P...	Banana	mitochondrion	59.59	20.47
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	59.59	20.05
Os11t0620100-01	Rice	nucleus	58.22	19.27
Os07t0615400-01	Rice	nucleus	56.16	19.2
TraesCS2A01G169100.1	Wheat	nucleus	55.48	18.93
GSMUA_Achr11P...	Banana	nucleus	57.53	18.92
AT1G54080.2	Thale cress	nucleus	55.48	18.84
Zm00001d048824_P004	Maize	nucleus	57.53	18.79
TraesCS2D01G176700.1	Wheat	nucleus	54.79	18.78
TraesCS2B01G195400.1	Wheat	nucleus	54.79	18.65
CDY61476	Canola	nucleus	53.42	18.62
Bra030908.1-P	Field mustard	nucleus	53.42	18.62
CDY33092	Canola	nucleus	54.11	18.59
CDY51403	Canola	nucleus	53.42	18.57
CDY02486	Canola	nucleus	53.42	18.57
Bra037962.1-P	Field mustard	nucleus	53.42	18.53
TraesCS4B01G148600.1	Wheat	nucleus	55.48	18.2
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	60.96	17.94
HORVU4Hr1G033990.7	Barley	golgi, nucleus	53.42	17.77
TraesCS4A01G150000.1	Wheat	mitochondrion	54.11	17.63
VIT_04s0008g02930.t01	Wine grape	nucleus	47.95	17.63
TraesCS4D01G150600.2	Wheat	nucleus	54.11	17.59
EES08860	Sorghum	nucleus	52.05	17.23
HORVU2Hr1G031260.2	Barley	nucleus, plastid	54.79	16.1
Zm00001d026528_P001	Maize	plastid	12.33	8.18
VIT_03s0063g00850.t01	Wine grape	nucleus	18.49	6.52
VIT_18s0001g11080.t01	Wine grape	nucleus	18.49	6.46
VIT_19s0090g00280.t01	Wine grape	nucleus	19.18	6.05
VIT_06s0004g02040.t01	Wine grape	nucleus	17.12	5.62
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	15.07	4.62
VIT_18s0001g10170.t01	Wine grape	cytosol	19.18	4.38
VIT_07s0031g00210.t01	Wine grape	cytosol	19.18	4.28
VIT_08s0007g04380.t01	Wine grape	cytosol	17.81	4.1
VIT_18s0001g02490.t01	Wine grape	plastid	15.75	3.49
VIT_04s0023g01470.t01	Wine grape	nucleus	8.9	3.49
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	17.81	3.3
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.37	1.6
VIT_18s0001g10210.t01	Wine grape	cytosol	0.0	0.0
VIT_18s0001g10220.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_04s0043g01000	EMBL:FN595763	EnsemblPlants:VIT_04s0043g01000.t01	EnsemblPlantsGene:VIT_04s0043g01000	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:RBD_domain_sf	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	ProteinID:CBI28685	ProteinID:CBI28685.3
SEG:seg	SUPFAM:SSF54928	UniParc:UPI0001BE32E0	UniProt:D7TDW2	MapMan:35.1	:

Description

No Description!

Coordinates

chr4:-:15677780..15678625

Molecular Weight (calculated)

16169.8 Da

IEP (calculated)

9.457

GRAVY (calculated)

-0.066

Length

146 amino acids

Sequence
(BLAST)

001: MLFCFSHLFG CKGYVGSEDW AFKRVWICFF PQSARCPVRV QRDGGFGFVR YNTHIETSLA IWMGNTQSIL CGKPIMCSWG SKPTPPGTSS NPLLLSAAAP
101: LPSLSATDLR AYERQLAMSK MGGVHALMHP QGQHPFKQAT MRMGCH

Best Arabidopsis Sequence Match ( AT3G14100.1 )
(BLAST)

001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ

Arabidopsis Description

UBP1COligouridylate-binding protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.