Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g01100.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | VIT_07s0005g01100.t01 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g066570.2.1 | Tomato | cytosol | 54.42 | 61.58 |
| PGSC0003DMT400056874 | Potato | cytosol | 61.4 | 60.0 |
| Bra035096.1-P | Field mustard | nucleus | 60.47 | 55.79 |
| CDX76373 | Canola | nucleus | 60.47 | 55.08 |
| CDX88511 | Canola | nucleus | 60.47 | 55.08 |
| CDY37016 | Canola | nucleus | 60.47 | 55.08 |
| AT1G79160.1 | Thale cress | cytosol | 60.93 | 54.81 |
| Bra026718.1-P | Field mustard | nucleus | 58.14 | 51.65 |
| CDY51001 | Canola | nucleus | 58.14 | 51.23 |
| CDX81765 | Canola | cytosol | 57.21 | 51.04 |
| KRH13717 | Soybean | nucleus | 59.07 | 50.6 |
| VIT_10s0092g00640.t01 | Wine grape | cytosol | 50.7 | 49.55 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 56.28 | 49.39 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 56.28 | 49.39 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 55.35 | 48.57 |
| AT1G16500.1 | Thale cress | cytosol | 57.67 | 47.88 |
| CDX79304 | Canola | cytosol | 48.84 | 46.46 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 40.47 | 40.65 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 11.16 | 39.34 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.21 | 38.28 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 37.21 | 37.04 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 35.81 | 35.98 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 37.21 | 35.56 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 36.74 | 35.43 |
| GSMUA_Achr11P... | Banana | cytosol | 39.07 | 34.85 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 27.91 | 33.9 |
| TraesCS2B01G480800.1 | Wheat | cytosol | 34.88 | 33.78 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 32.56 | 33.65 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 34.88 | 33.63 |
| TraesCS2B01G480900.1 | Wheat | cytosol | 32.09 | 33.33 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 33.95 | 33.03 |
| TraesCS2B01G481200.1 | Wheat | cytosol | 33.49 | 32.58 |
| TraesCS2A01G459500.1 | Wheat | cytosol | 34.88 | 32.47 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 33.02 | 32.13 |
| TraesCS2A01G459400.1 | Wheat | cytosol | 31.63 | 32.08 |
| Zm00001d013614_P001 | Maize | cytosol | 11.16 | 31.17 |
| HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 35.81 | 30.32 |
| Zm00001d013615_P001 | Maize | cytosol | 31.63 | 29.69 |
| EER91121 | Sorghum | cytosol | 32.09 | 28.63 |
| Zm00001d033459_P001 | Maize | cytosol | 29.77 | 28.19 |
| OQU82335 | Sorghum | plastid | 37.21 | 28.07 |
| TraesCS4D01G015300.1 | Wheat | cytosol | 29.3 | 27.51 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 26.98 | 27.49 |
| TraesCS4B01G017000.1 | Wheat | nucleus | 27.91 | 26.91 |
| TraesCS4A01G296700.1 | Wheat | nucleus | 28.37 | 26.52 |
| Os03t0660700-01 | Rice | nucleus | 22.33 | 25.0 |
| HORVU4Hr1G002540.1 | Barley | plastid | 26.98 | 17.31 |
Protein Annotations
| ArrayExpress:VIT_19s0085g00030 | EMBL:FN595503 | EnsemblPlants:VIT_19s0085g00030.t01 | EnsemblPlantsGene:VIT_19s0085g00030 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 |
| ProteinID:CBI24205 | ProteinID:CBI24205.3 | SEG:seg | TIGR:TC59735 | UniParc:UPI0001BE27A1 | UniProt:D7T0Y5 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:22322853..22324730
Molecular Weight (calculated)
23217.7 Da
IEP (calculated)
9.018
GRAVY (calculated)
-0.421
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MAADVTSVVR ILGGYKDDPA VGSESGNSTV LITRDLLGGG GGGLSSKLDS QELDLDLKVP DGWEKRLDLK SGKVYLQRCN SPMSSSSSSQ NKHHPTNETV
101: PTLQDLNFPP NPKPTLNLFE DTNLDLKLVP SSFNYPSVCT LDKVKSALER AERSTIKKRS SSMSKSSSLY FTAGCPGCLL YVLISKNNPK CPRCNSVVPT
201: PATTKKPRID LNISI
101: PTLQDLNFPP NPKPTLNLFE DTNLDLKLVP SSFNYPSVCT LDKVKSALER AERSTIKKRS SSMSKSSSLY FTAGCPGCLL YVLISKNNPK CPRCNSVVPT
201: PATTKKPRID LNISI
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
Arabidopsis Description
Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.