Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G172000.1 | |
| TraesCS3B01G202800.2 | |
| TraesCS3D01G178500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | TraesCS3A01G172000.1 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | TraesCS3B01G202800.2 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | TraesCS3D01G178500.1 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G481200.1 | Wheat | cytosol | 95.02 | 95.02 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 94.57 | 94.57 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 71.04 | 88.7 |
| TraesCS2A01G459500.1 | Wheat | cytosol | 91.4 | 87.45 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 81.45 | 86.54 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 82.81 | 82.06 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 18.55 | 67.21 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 64.71 | 66.2 |
| OQU82335 | Sorghum | plastid | 62.9 | 48.77 |
| Solyc07g066570.2.1 | Tomato | cytosol | 35.75 | 41.58 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 37.56 | 38.78 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 37.1 | 38.32 |
| PGSC0003DMT400056874 | Potato | cytosol | 37.1 | 37.27 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 37.1 | 36.44 |
| GSMUA_Achr11P... | Banana | cytosol | 38.91 | 35.68 |
| GSMUA_AchrUn_... | Banana | cytosol | 32.58 | 34.45 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 33.03 | 33.95 |
| VIT_10s0092g00640.t01 | Wine grape | cytosol | 33.48 | 33.64 |
| Bra026718.1-P | Field mustard | nucleus | 34.84 | 31.82 |
| KRH13717 | Soybean | nucleus | 35.75 | 31.47 |
| AT1G79160.1 | Thale cress | cytosol | 33.94 | 31.38 |
| CDY37016 | Canola | nucleus | 33.48 | 31.36 |
| CDX88511 | Canola | nucleus | 33.48 | 31.36 |
| CDX76373 | Canola | nucleus | 33.48 | 31.36 |
| Bra035096.1-P | Field mustard | nucleus | 33.03 | 31.33 |
| CDY51001 | Canola | nucleus | 34.39 | 31.15 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 34.39 | 31.02 |
| CDX81765 | Canola | cytosol | 33.48 | 30.71 |
| TraesCS4D01G015300.1 | Wheat | cytosol | 31.67 | 30.57 |
| CDX79304 | Canola | cytosol | 31.22 | 30.53 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 33.48 | 30.2 |
| AT1G16500.1 | Thale cress | cytosol | 35.29 | 30.12 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 32.58 | 29.39 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G459800.1 | EnsemblPlantsGene:TraesCS2D01G459800 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr2D:-:566655591..566656759
Molecular Weight (calculated)
22829.7 Da
IEP (calculated)
6.890
GRAVY (calculated)
-0.321
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPELSSIAR MLRGEAGNGR GGAAKPSEMV TMDLLGGCGG DAGVESEVVD LEAKVPAGWE RRLDLLSGKT FLTPHRHQAT QDGHQDLNLP PTASTAAAVT
101: STSAAFCTLD MVRYALERAT AVRSATSPDT SSSSLASTSS SSSSLGKRSR SPPSNTASPA ANPAMRACAC PSCFTYVLIA EADPWCPRCA SKVPPLPSKP
201: AAHSSGKKPR IDLNADADET E
101: STSAAFCTLD MVRYALERAT AVRSATSPDT SSSSLASTSS SSSSLGKRSR SPPSNTASPA ANPAMRACAC PSCFTYVLIA EADPWCPRCA SKVPPLPSKP
201: AAHSSGKKPR IDLNADADET E
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
Arabidopsis Description
Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.